DMR 210 chr1:35928201-35928350 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:35928201-35928350 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | KIAA0319L (0bp away) |
| ANODEV p-value | 0.00676763212096 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 210 | KIAA0319L | 637 | uc001byx.3 | chr1 | 35899091 | 36023037 | - | 150 | 100.0 | 0.34 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (24.67), E8 (62), I8 (14), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
| 210 | KIAA0319L | 637 | uc010ohv.1 | chr1 | 35904143 | 35936561 | - | 150 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (24.67), E3 (62), I3 (14), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 210 | KIAA0319L | 637 | uc010ohw.2 | chr1 | 35925975 | 36023551 | - | 150 | 100.0 | 0.16 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (24.67), E7 (62), I7 (14), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 210 | chr1 | 35927887 | 35928256 | wgEncodeRegTfbsClusteredV3 | RELA | score:301, expCount:1, expNums:325, expScores:301, srow:101933 |
| 210 | chr1 | 35927894 | 35928209 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:220, expCount:1, expNums:292, expScores:220, srow:101934 |
| 210 | chr1 | 35927977 | 35928212 | wgEncodeRegTfbsClusteredV3 | BATF | score:144, expCount:1, expNums:81, expScores:144, srow:101935 |
| 210 | chr1 | 35928226 | 35928235 | tfbsConsSites | V$CDPCR1_01 | score:914, zScore:3.18, srow:77718 |
| 210 | chr1 | 35928291 | 35928299 | tfbsConsSites | V$ZIC3_01 | score:916, zScore:1.76, srow:77719 |
| 210 | chr1 | 35928231 | 35928231 | cosmic | COSM908705 | srow:22993 |
| 210 | chr1 | 35928231 | 35928231 | cosmic | COSM908706 | srow:22994 |
| 210 | chr1 | 35928309 | 35928309 | cosmic | COSM186427 | srow:22995 |
| 210 | chr1 | 35928309 | 35928309 | cosmic | COSM186426 | srow:22996 |
| 210 | chr1 | 35928212 | 35928237 | phastConsElements100way | lod=274 | score:549, srow:148618 |
| 210 | chr1 | 35928239 | 35928240 | phastConsElements100way | lod=40 | score:359, srow:148619 |
| 210 | chr1 | 35928242 | 35928276 | phastConsElements100way | lod=381 | score:582, srow:148620 |
| 210 | chr1 | 35928278 | 35928282 | phastConsElements100way | lod=67 | score:410, srow:148621 |
| 210 | chr1 | 35928284 | 35928298 | phastConsElements100way | lod=150 | score:489, srow:148622 |
| 210 | chr1 | 35928300 | 35928306 | phastConsElements100way | lod=82 | score:430, srow:148623 |
| 210 | chr1 | 35928308 | 35928317 | phastConsElements100way | lod=113 | score:461, srow:148624 |
| 210 | chr1 | 35928319 | 35928324 | phastConsElements100way | lod=19 | score:285, srow:148625 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 210 | cellmeth_recounts | PrEC: 0, LNCaP: 1, DU145: 0 |  |
| 210 | cellexp | id=ENSG00000142687, name=KIAA0319L, PrEC=3790, str=7043, LNCaP=10145, str=7204, DU145=3488, str=3314 |  |
| 210 | tcgaexp | gene=KIAA0319L, entrez=79932, pos=chr1:35899091-36023551(-), B=8240, L=14123, M=13100, H=10438 |  |
| 210 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |