DMR 21033 chr16:3021301-3021650 (350bp)
| DMR Stats | |
|---|---|
| Position | chr16:3021301-3021650 (View on UCSC) |
| Width | 350bp |
| Genomic Context | promoter |
| Nearest Genes | PAQR4 (0bp away) |
| ANODEV p-value | 0.0208065541405 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21033 | PAQR4 | 10821 | uc002csj.4 | chr16 | 3019342 | 3023485 | + | 350 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (22.57), I2 (39.14), E3 (38.57) | 0.0 |
| 21033 | PAQR4 | 10821 | uc002csk.4 | chr16 | 3019342 | 3023485 | + | 350 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (22.57), I2 (39.14), E3 (38.57) | 0.0 |
| 21033 | PAQR4 | 10821 | uc002csl.4 | chr16 | 3019342 | 3023485 | + | 350 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (61.43), E2 (38.57) | 0.0 |
| 21033 | PAQR4 | 10821 | uc010uwm.2 | chr16 | 3021045 | 3023485 | + | 350 | 100.0 | 0.12 | 0 | 69.71 | E1 (22.57), I1 (39.14), E2 (38.57) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 21033 | chr16 | 3021241 | 3021470 | wgEncodeRegDnaseClusteredV2 | 4 | score:299, srow:429896 |
| 21033 | chr16 | 3021486 | 3021775 | wgEncodeRegDnaseClusteredV2 | 6 | score:313, srow:429897 |
| 21033 | chr16 | 3018361 | 3026206 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:54, expNums:61,62,78,105,123,130,131,146,147,163,168,191,192,206,207,228,229,249,256,275,306,328,330,332,334,336,338,340,362,366,403,445,446,520,521,522,523,524,525,526,527,577,583,585,599,610,613,616,619,622,632,633,634,637, expScores:1000,716,438,838,253,278,388,349,274,432,342,533,210,201,277,202,386,160,156,255,357,284,262,409,151,273,169,200,102,117,343,123,249,224,172,194,185,218,160,404,148,204,398,233,211,169,240,237,229,269,547,329,214,131, srow:1453627 |
| 21033 | chr16 | 3020891 | 3021550 | wgEncodeRegTfbsClusteredV3 | SMARCB1 | score:183, expCount:1, expNums:391, expScores:183, srow:1453734 |
| 21033 | chr16 | 3021111 | 3021434 | wgEncodeRegTfbsClusteredV3 | CTCF | score:390, expCount:11, expNums:0,174,597,598,627,628,630,631,635,648,663, expScores:173,152,118,259,209,390,352,202,148,102,111, srow:1453735 |
| 21033 | chr16 | 3021628 | 3022123 | wgEncodeRegTfbsClusteredV3 | HMGN3 | score:198, expCount:1, expNums:501, expScores:198, srow:1453736 |
| 21033 | chr16 | 3021352 | 3021367 | tfbsConsSites | V$HAND1E47_01 | score:842, zScore:1.77, srow:1877740 |
| 21033 | chr16 | 3021360 | 3021370 | tfbsConsSites | V$EVI1_02 | score:862, zScore:2.02, srow:1877741 |
| 21033 | chr16 | 3021367 | 3021377 | tfbsConsSites | V$FOXO4_01 | score:910, zScore:1.7, srow:1877742 |
| 21033 | chr16 | 3021537 | 3021550 | tfbsConsSites | V$ROAZ_01 | score:753, zScore:1.87, srow:1877743 |
| 21033 | chr16 | 3021562 | 3021576 | tfbsConsSites | V$E47_01 | score:886, zScore:2.13, srow:1877744 |
| 21033 | chr16 | 3021565 | 3021574 | tfbsConsSites | V$AP4_Q5 | score:956, zScore:1.84, srow:1877745 |
| 21033 | chr16 | 3021574 | 3021582 | tfbsConsSites | V$HOXA3_01 | score:920, zScore:1.65, srow:1877746 |
| 21033 | chr16 | 3021574 | 3021587 | tfbsConsSites | V$NFY_C | score:881, zScore:2.39, srow:1877747 |
| 21033 | chr16 | 3021625 | 3021637 | tfbsConsSites | V$MZF1_02 | score:865, zScore:1.85, srow:1877748 |
| 21033 | chr16 | 3021356 | 3021356 | cosmic | COSM1219264 | srow:423998 |
| 21033 | chr16 | 3021280 | 3021317 | phastConsElements100way | lod=376 | score:580, srow:3231461 |
| 21033 | chr16 | 3021322 | 3021338 | phastConsElements100way | lod=121 | score:468, srow:3231462 |
| 21033 | chr16 | 3021340 | 3021356 | phastConsElements100way | lod=183 | score:509, srow:3231463 |
| 21033 | chr16 | 3021358 | 3021365 | phastConsElements100way | lod=83 | score:431, srow:3231464 |
| 21033 | chr16 | 3021367 | 3021374 | phastConsElements100way | lod=95 | score:444, srow:3231465 |
| 21033 | chr16 | 3021376 | 3021377 | phastConsElements100way | lod=21 | score:295, srow:3231466 |
| 21033 | chr16 | 3021379 | 3021384 | phastConsElements100way | lod=93 | score:442, srow:3231467 |
| 21033 | chr16 | 3021511 | 3021519 | phastConsElements100way | lod=82 | score:430, srow:3231468 |
| 21033 | chr16 | 3021521 | 3021564 | phastConsElements100way | lod=329 | score:567, srow:3231469 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 21033 | cellmeth_recounts | PrEC: 35, LNCaP: 93, DU145: 4 |  |
| 21033 | cellmeth_diffreps_PrECvsDU145 | A=106, B=2, Length=680, Event=Down, log2FC=-5.73, padj=0 |  |
| 21033 | cellmeth_diffreps_LNCaPvsDU145 | A=195.64, B=3.74, Length=1040, Event=Down, log2FC=-5.71, padj=0 |  |
| 21033 | cellexp | id=ENSG00000127564, name=PKMYT1, PrEC=5607, str=151, LNCaP=1630, str=1617, DU145=2406, str=3429 |  |
| 21033 | cellexp | id=ENSG00000162073, name=PAQR4, PrEC=1387, str=448, LNCaP=620, str=580, DU145=821, str=973 |  |
| 21033 | tcgaexp | gene=PAQR4, entrez=124222, pos=chr16:3019342-3023485(+), B=1947, L=1983, M=2399, H=2462 |  |