DMR 211 chr1:36025401-36025600 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:36025401-36025600 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | NCDN (0bp away) |
| ANODEV p-value | 0.000966749811905 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 211 | NCDN | 638 | uc001bza.3 | chr1 | 36023393 | 36032380 | + | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 211 | NCDN | 638 | uc001bzb.3 | chr1 | 36023393 | 36032380 | + | 200 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 211 | NCDN | 638 | uc001bzc.3 | chr1 | 36023393 | 36032380 | + | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 211 | chr1 | 36025046 | 36025475 | wgEncodeRegDnaseClusteredV2 | 18 | score:295, srow:28701 |
| 211 | chr1 | 36025183 | 36025552 | wgEncodeRegTfbsClusteredV3 | MAZ | score:176, expCount:1, expNums:512, expScores:176, srow:102253 |
| 211 | chr1 | 36025386 | 36025401 | tfbsConsSites | V$FREAC2_01 | score:851, zScore:2.41, srow:78080 |
| 211 | chr1 | 36025387 | 36025402 | tfbsConsSites | V$BRN2_01 | score:839, zScore:2.45, srow:78081 |
| 211 | chr1 | 36025390 | 36025407 | tfbsConsSites | V$RFX1_02 | score:882, zScore:2.82, srow:78082 |
| 211 | chr1 | 36025448 | 36025458 | tfbsConsSites | V$FOXO4_01 | score:932, zScore:2.06, srow:78083 |
| 211 | chr1 | 36025450 | 36025459 | tfbsConsSites | V$FOXO1_01 | score:952, zScore:1.72, srow:78084 |
| 211 | chr1 | 36025471 | 36025478 | tfbsConsSites | V$STAT1_03 | score:997, zScore:1.94, srow:78085 |
| 211 | chr1 | 36025508 | 36025528 | tfbsConsSites | V$STAT3_01 | score:753, zScore:1.75, srow:78086 |
| 211 | chr1 | 36025509 | 36025530 | tfbsConsSites | V$OLF1_01 | score:844, zScore:2.5, srow:78087 |
| 211 | chr1 | 36025511 | 36025518 | tfbsConsSites | V$STAT1_03 | score:997, zScore:1.94, srow:78088 |
| 211 | chr1 | 36025348 | 36025418 | phastConsElements100way | lod=373 | score:580, srow:149234 |
| 211 | chr1 | 36025421 | 36025491 | phastConsElements100way | lod=411 | score:589, srow:149235 |
| 211 | chr1 | 36025496 | 36025552 | phastConsElements100way | lod=188 | score:512, srow:149236 |
| 211 | chr1 | 36025556 | 36025558 | phastConsElements100way | lod=16 | score:268, srow:149237 |
| 211 | chr1 | 36025572 | 36025577 | phastConsElements100way | lod=28 | score:323, srow:149238 |
| 211 | chr1 | 36023835 | 36025834 | cpgShore | — | values(x.gr)[overs$srow, ]:1562 |
- 17 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 211 | cellmeth_recounts | PrEC: 1, LNCaP: 3, DU145: 4 |  |
| 211 | cellexp | id=ENSG00000020129, name=NCDN, PrEC=2620, str=2783, LNCaP=5086, str=4332, DU145=2773, str=2548 |  |
| 211 | tcgameth | site:cg12728588, B=0.94, L=0.94, H=0.94 |  |
| 211 | tcgaexp | gene=NCDN, entrez=23154, pos=chr1:36023393-36032380(+), B=2443, L=3688, M=3333, H=3306 |  |
| 211 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |