DMR 21237 chr16:31477901-31478150 (250bp)
| DMR Stats | |
|---|---|
| Position | chr16:31477901-31478150 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | ARMC5 (0bp away) |
| ANODEV p-value | 0.000886153176743 |
| Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21237 | ARMC5 | 11320 | uc002eca.4 | chr16 | 31470317 | 31478488 | + | 250 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100) | 100.0 |
| 21237 | ARMC5 | 11320 | uc002ecb.2 | chr16 | 31470789 | 31478487 | + | 250 | 100.0 | 0.33 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) | 100.0 |
| 21237 | ARMC5 | 11320 | uc002ecc.3 | chr16 | 31470317 | 31478488 | + | 250 | 100.0 | 0.14 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) | 100.0 |
| 21237 | ARMC5 | 11320 | uc010vfn.2 | chr16 | 31469594 | 31478488 | + | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (100) | 100.0 |
| 21237 | ARMC5 | 11320 | uc010vfo.2 | chr16 | 31470268 | 31478488 | + | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 100.0 |
| 21237 | ARMC5 | 11320 | uc010vfp.2 | chr16 | 31470789 | 31478488 | + | 250 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) | 100.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 21237 | chr16 | 31477681 | 31477935 | wgEncodeRegDnaseClusteredV2 | 2 | score:138, srow:444912 |
| 21237 | chr16 | 31477966 | 31478135 | wgEncodeRegDnaseClusteredV2 | 2 | score:285, srow:444913 |
| 21237 | chr16 | 31477883 | 31477903 | tfbsConsSites | V$PPARG_01 | score:734, zScore:1.81, srow:1938997 |
| 21237 | chr16 | 31477990 | 31477998 | tfbsConsSites | V$ZIC3_01 | score:926, zScore:1.92, srow:1938999 |
| 21237 | chr16 | 31478005 | 31478011 | tfbsConsSites | V$AP2REP_01 | score:1000, zScore:2.36, srow:1939000 |
| 21237 | chr16 | 31478027 | 31478046 | tfbsConsSites | V$P53_01 | score:680, zScore:1.8, srow:1939001 |
| 21237 | chr16 | 31478027 | 31478054 | tfbsConsSites | V$PAX5_01 | score:784, zScore:2.01, srow:1939002 |
| 21237 | chr16 | 31478028 | 31478048 | tfbsConsSites | V$PAX4_01 | score:831, zScore:2.26, srow:1939003 |
| 21237 | chr16 | 31478030 | 31478047 | tfbsConsSites | V$AP4_01 | score:875, zScore:2.66, srow:1939004 |
| 21237 | chr16 | 31478034 | 31478062 | tfbsConsSites | V$MYOGNF1_01 | score:745, zScore:1.84, srow:1939005 |
| 21237 | chr16 | 31478041 | 31478059 | tfbsConsSites | V$GR_Q6 | score:851, zScore:2.18, srow:1939006 |
| 21237 | chr16 | 31478047 | 31478053 | tfbsConsSites | V$AP2REP_01 | score:1000, zScore:2.36, srow:1939007 |
| 21237 | chr16 | 31478094 | 31478123 | tfbsConsSites | V$HOX13_01 | score:712, zScore:1.8, srow:1939008 |
| 21237 | chr16 | 31478134 | 31478148 | tfbsConsSites | V$TAXCREB_02 | score:743, zScore:1.64, srow:1939009 |
| 21237 | chr16 | 31478150 | 31478166 | tfbsConsSites | V$PPARG_03 | score:804, zScore:2.25, srow:1939010 |
| 21237 | chr16 | 31477924 | 31477924 | cosmic | COSM1183636 | srow:442043 |
| 21237 | chr16 | 31477995 | 31477995 | cosmic | COSM1563131 | srow:442044 |
| 21237 | chr16 | 31477899 | 31477902 | phastConsElements100way | lod=21 | score:295, srow:3333601 |
| 21237 | chr16 | 31477905 | 31477906 | phastConsElements100way | lod=12 | score:240, srow:3333602 |
| 21237 | chr16 | 31477917 | 31477918 | phastConsElements100way | lod=13 | score:247, srow:3333603 |
| 21237 | chr16 | 31477923 | 31477924 | phastConsElements100way | lod=17 | score:274, srow:3333604 |
| 21237 | chr16 | 31477930 | 31477934 | phastConsElements100way | lod=17 | score:274, srow:3333605 |
| 21237 | chr16 | 31477944 | 31477963 | phastConsElements100way | lod=63 | score:404, srow:3333606 |
| 21237 | chr16 | 31477977 | 31477984 | phastConsElements100way | lod=14 | score:255, srow:3333607 |
| 21237 | chr16 | 31477992 | 31477993 | phastConsElements100way | lod=16 | score:268, srow:3333608 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 21237 | cellmeth_recounts | PrEC: 33, LNCaP: 20, DU145: 3 |  |
| 21237 | cellmeth_diffreps_PrECvsLNCaP | A=48, B=15, Length=320, Event=Down, log2FC=-1.68, padj=0.000793863773154721 |  |
| 21237 | cellmeth_diffreps_PrECvsDU145 | A=50, B=2, Length=420, Event=Down, log2FC=-4.64, padj=1.56007959341554e-11 |  |
| 21237 | cellexp | id=ENSG00000140691, name=ARMC5, PrEC=805, str=700, LNCaP=1608, str=966, DU145=429, str=306 |  |
| 21237 | tcgaexp | gene=ARMC5, entrez=79798, pos=chr16:31469594-31478488(+), B=919, L=1312, M=1278, H=1016 |  |