DMR 21485 chr16:89916451-89916600 (150bp)
| DMR Stats | |
|---|---|
| Position | chr16:89916451-89916600 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | SPIRE2 (0bp away) |
| ANODEV p-value | 0.0195292106683 |
| Frequencies | Benign: 6.0 (85.71%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21485 | SPIRE2 | 11854 | uc002foz.1 | chr16 | 89894907 | 89937727 | + | 150 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 21485 | SPIRE2 | 11854 | uc002fpa.1 | chr16 | 89916274 | 89937727 | + | 150 | 100.0 | 0.01 | 0 | 100.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 21485 | SPIRE2 | 11854 | uc010civ.1 | chr16 | 89894907 | 89925762 | + | 150 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 21485 | SPIRE2 | 11854 | uc010ciw.1 | chr16 | 89894907 | 89937727 | + | 150 | 100.0 | 0.01 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 21485 | chr16 | 89916506 | 89916835 | wgEncodeRegDnaseClusteredV2 | 7 | score:351, srow:470666 |
| 21485 | chr16 | 89914651 | 89916650 | cpgShore | — | values(x.gr)[overs$srow, ]:17970 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 21485 | cellmeth_recounts | PrEC: 15, LNCaP: 15, DU145: 15 |  |
| 21485 | cellmeth_diffreps_PrECvsLNCaP | A=896, B=96, Length=760, Event=Down, log2FC=-3.22, padj=0 |  |
| 21485 | cellmeth_diffreps_PrECvsDU145 | A=899, B=45, Length=780, Event=Down, log2FC=-4.32, padj=0 |  |
| 21485 | cellmeth_diffreps_LNCaPvsDU145 | A=67.35, B=15.9, Length=380, Event=Down, log2FC=-2.08, padj=1.45006595473535e-06 |  |
| 21485 | cellexp | id=ENSG00000204991, name=SPIRE2, PrEC=123, str=76, LNCaP=1120, str=578, DU145=764, str=386 |  |
| 21485 | tcgaexp | gene=SPIRE2, entrez=84501, pos=chr16:89894907-89937727(+), B=478, L=331, M=343, H=378 |  |