DMR 21492 chr17:139151-139350 (200bp)
| DMR Stats | |
|---|---|
| Position | chr17:139151-139350 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | RPH3AL (0bp away) |
| ANODEV p-value | 0.000578536407308 |
| Frequencies | Benign: 7.0 (100.0%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21492 | RPH3AL | 11877 | uc002fre.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 21492 | RPH3AL | 11877 | uc002frf.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 21492 | RPH3AL | 11877 | uc010cjl.2 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 21492 | RPH3AL | 11877 | uc010vpy.2 | chr17 | 62180 | 177370 | - | 200 | 100.0 | 0.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 21492 | RPH3AL | 11877 | uc021tmx.1 | chr17 | 62180 | 202633 | - | 200 | 100.0 | 0.26 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 21492 | chr17 | 138686 | 139170 | wgEncodeRegDnaseClusteredV2 | 15 | score:309, srow:471045 |
| 21492 | chr17 | 138589 | 140588 | cpgShore | — | values(x.gr)[overs$srow, ]:18029 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 21492 | cellmeth_recounts | PrEC: 9, LNCaP: 13, DU145: 8 |  |
| 21492 | cellmeth_diffreps_PrECvsLNCaP | A=166, B=25, Length=880, Event=Down, log2FC=-2.73, padj=0 |  |
| 21492 | cellmeth_diffreps_PrECvsDU145 | A=37, B=9, Length=360, Event=Down, log2FC=-2.04, padj=0.000873494998786926 |  |
| 21492 | cellexp | id=ENSG00000181031, name=RPH3AL, PrEC=139, str=116, LNCaP=825, str=593, DU145=1180, str=616 |  |
| 21492 | tcgaexp | gene=RPH3AL, entrez=9501, pos=chr17:62180-202633(-), B=579, L=622, M=682, H=475 |  |
| 21492 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 21492 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |