DMR 21601 chr17:7466401-7466750 (350bp)

DMR Stats
Positionchr17:7466401-7466750 (View on UCSC)
Width350bp
Genomic Contextpromoter
Nearest GenesSENP3, SENP3-EIF4A1 (0bp away)
ANODEV p-value0.000274579746314
FrequenciesBenign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
21601 SENP3 12096 uc002ghm.3 chr17 7465309 7475287 + 350 100.0 0.13 0 0.0 E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
21601 SENP3-EIF4A1 12095 uc002gho.2 chr17 7465309 7482324 + 350 100.0 0.13 0 0.0 E1 (0), I1 (0), E2 (100), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
21601 chr17 7466106 7466615 wgEncodeRegDnaseClusteredV2 4 score:150, srow:476772
21601 chr17 7466416 7466434 tfbsConsSites V$ER_Q6 score:797, zScore:2.02, srow:2080840
21601 chr17 7466465 7466486 tfbsConsSites V$OLF1_01 score:799, zScore:1.75, srow:2080841
21601 chr17 7466490 7466507 tfbsConsSites V$NF1_Q6 score:882, zScore:1.87, srow:2080842
21601 chr17 7466493 7466505 tfbsConsSites V$MAZR_01 score:856, zScore:1.68, srow:2080843
21601 chr17 7466526 7466540 tfbsConsSites V$SPZ1_01 score:896, zScore:2.21, srow:2080844
21601 chr17 7466527 7466540 tfbsConsSites V$RREB1_01 score:840, zScore:2.19, srow:2080845
21601 chr17 7466548 7466558 tfbsConsSites V$CP2_01 score:886, zScore:1.85, srow:2080846
21601 chr17 7466559 7466564 tfbsConsSites V$AML1_01 score:1000, zScore:1.78, srow:2080847
21601 chr17 7466596 7466609 tfbsConsSites V$OCT1_06 score:884, zScore:2.12, srow:2080848
21601 chr17 7466605 7466615 tfbsConsSites V$NFE2_01 score:919, zScore:2.67, srow:2080849
21601 chr17 7466695 7466716 tfbsConsSites V$HEN1_02 score:787, zScore:2.19, srow:2080850
21601 chr17 7466698 7466715 tfbsConsSites V$AP4_01 score:849, zScore:2.26, srow:2080851
21601 chr17 7466708 7466719 tfbsConsSites V$NFKB_C score:847, zScore:1.83, srow:2080852
21601 chr17 7466713 7466721 tfbsConsSites V$LYF1_01 score:942, zScore:1.79, srow:2080853
21601 chr17 7466478 7466478 cosmic COSM1386469 srow:470893
21601 chr17 7466484 7466484 cosmic COSM1225207 srow:470894
21601 chr17 7466369 7466629 phastConsElements100way lod=932 score:670, srow:3558499
21601 chr17 7466631 7466635 phastConsElements100way lod=23 score:304, srow:3558500
21601 chr17 7466637 7466641 phastConsElements100way lod=26 score:316, srow:3558501
21601 chr17 7466643 7466644 phastConsElements100way lod=13 score:247, srow:3558502
21601 chr17 7466646 7466711 phastConsElements100way lod=230 score:532, srow:3558503
21601 chr17 7466716 7466728 phastConsElements100way lod=42 score:363, srow:3558504
21601 chr17 7466736 7466737 phastConsElements100way lod=13 score:247, srow:3558505
21601 chr17 7466745 7466773 phastConsElements100way lod=113 score:461, srow:3558506
  • Page 1 of 2
  • 25 of 26 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
21601 cellmeth_recounts PrEC: 15, LNCaP: 10, DU145: 3
21601 cellmeth_diffreps_PrECvsLNCaP A=64, B=26, Length=240, Event=Down, log2FC=-1.3, padj=0.00164014845783929
21601 cellmeth_diffreps_PrECvsDU145 A=65, B=9, Length=420, Event=Down, log2FC=-2.85, padj=5.75959887669342e-10
21601 cellmeth_diffreps_LNCaPvsDU145 A=33.14, B=8.42, Length=260, Event=Down, log2FC=-1.98, padj=0.00708953135814864
21601 cellexp id=ENSG00000161956, name=SENP3, PrEC=1187, str=501, LNCaP=1302, str=1119, DU145=1338, str=1299
21601 cellexp id=ENSG00000265500, name=SENP3-EIF4A1, PrEC=9, str=21, LNCaP=5, str=14, DU145=13, str=21
21601 tcgameth site:cg06709089, B=0.67, L=0.54, H=0.56
21601 tcgameth site:cg09196565, B=0.91, L=0.89, H=0.86
21601 tcgaexp gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18
21601 tcgaexp gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583
21601 tcgaexp gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700
21601 tcgaexp gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418
21601 tcgaexp gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940
21601 tcgaexp gene=SENP3, entrez=26168, pos=chr17:7465309-7475287(+), B=2490, L=2529, M=2349, H=2338
21601 tcgaexp gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230
21601 tcgaexp gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450
21601 tcgaexp gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223
21601 tcgaexp gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0
21601 tcgaexp gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486
21601 tcgaexp gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0
21601 tcgaexp gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017
21601 tcgaexp gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598
21601 tcgaexp gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377
21601 tcgaexp gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90
21601 tcgaexp gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2
21601 tcgaexp gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4