DMR 21679 chr17:16875251-16875400 (150bp)
| DMR Stats | |
|---|---|
| Position | chr17:16875251-16875400 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | TNFRSF13B (0bp away) |
| ANODEV p-value | 0.0137733882715 |
| Frequencies | Benign: 5.0 (71.43%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21679 | TNFRSF13B | 12255 | uc002gqs.1 | chr17 | 16842398 | 16875402 | - | 150 | 100.0 | 0.32 | 0 | 100.0 | E1 (48), I1 (52), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 21679 | TNFRSF13B | 12255 | uc002gqt.1 | chr17 | 16842398 | 16875402 | - | 150 | 100.0 | 0.32 | 0 | 100.0 | E1 (48), I1 (52), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) | 0.0 |
| 21679 | TNFRSF13B | 12255 | uc010vwt.1 | chr17 | 16832849 | 16875402 | - | 150 | 100.0 | 0.32 | 1 | 100.0 | E1 (48), I1 (52), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 21679 | chr17 | 16875221 | 16875695 | wgEncodeRegDnaseClusteredV2 | 21 | score:511, srow:481673 |
| 21679 | chr17 | 16874815 | 16875613 | wgEncodeRegTfbsClusteredV3 | NFIC | score:414, expCount:1, expNums:97, expScores:321, srow:1642432 |
| 21679 | chr17 | 16874890 | 16875628 | wgEncodeRegTfbsClusteredV3 | RELA | score:395, expCount:6, expNums:282,300,325,327,337,339, expScores:329,167,319,192,395,228, srow:1642433 |
| 21679 | chr17 | 16874901 | 16875870 | wgEncodeRegTfbsClusteredV3 | MTA3 | score:462, expCount:1, expNums:95, expScores:371, srow:1642434 |
| 21679 | chr17 | 16874973 | 16875857 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:19, expNums:104,105,123,130,131,283,306,307,308,326,328,330,332,334,336,338,340,585,602, expScores:912,523,291,440,812,187,422,311,225,670,228,226,392,863,1000,255,234,367,276, srow:1642435 |
| 21679 | chr17 | 16874976 | 16875285 | wgEncodeRegTfbsClusteredV3 | PAX5 | score:310, expCount:2, expNums:100,101, expScores:310,214, srow:1642436 |
| 21679 | chr17 | 16874976 | 16875649 | wgEncodeRegTfbsClusteredV3 | RUNX3 | score:670, expCount:1, expNums:109, expScores:261, srow:1642437 |
| 21679 | chr17 | 16874985 | 16875520 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:177, expCount:1, expNums:312, expScores:177, srow:1642438 |
| 21679 | chr17 | 16875022 | 16875705 | wgEncodeRegTfbsClusteredV3 | PML | score:348, expCount:1, expNums:103, expScores:348, srow:1642439 |
| 21679 | chr17 | 16875030 | 16875399 | wgEncodeRegTfbsClusteredV3 | EP300 | score:155, expCount:1, expNums:304, expScores:155, srow:1642440 |
| 21679 | chr17 | 16875109 | 16875464 | wgEncodeRegTfbsClusteredV3 | BCL3 | score:155, expCount:1, expNums:83, expScores:155, srow:1642441 |
| 21679 | chr17 | 16875122 | 16875381 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:188, expCount:1, expNums:116, expScores:188, srow:1642442 |
| 21679 | chr17 | 16875134 | 16875653 | wgEncodeRegTfbsClusteredV3 | ATF2 | score:236, expCount:1, expNums:79, expScores:236, srow:1642443 |
| 21679 | chr17 | 16875151 | 16875670 | wgEncodeRegTfbsClusteredV3 | FOXM1 | score:371, expCount:1, expNums:90, expScores:371, srow:1642444 |
| 21679 | chr17 | 16875203 | 16875557 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:207, expCount:2, expNums:115,127, expScores:207,150, srow:1642445 |
| 21679 | chr17 | 16875222 | 16875631 | wgEncodeRegTfbsClusteredV3 | TBL1XR1 | score:168, expCount:1, expNums:316, expScores:168, srow:1642446 |
| 21679 | chr17 | 16875225 | 16875439 | wgEncodeRegTfbsClusteredV3 | CTCF | score:149, expCount:3, expNums:603,605,606, expScores:124,121,149, srow:1642447 |
| 21679 | chr17 | 16875227 | 16875790 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:344, expCount:1, expNums:88, expScores:161, srow:1642448 |
| 21679 | chr17 | 16875253 | 16875576 | wgEncodeRegTfbsClusteredV3 | ZEB1 | score:290, expCount:1, expNums:121, expScores:290, srow:1642449 |
| 21679 | chr17 | 16875277 | 16875656 | wgEncodeRegTfbsClusteredV3 | TBP | score:305, expCount:1, expNums:317, expScores:305, srow:1642450 |
| 21679 | chr17 | 16875290 | 16875725 | wgEncodeRegTfbsClusteredV3 | MAZ | score:257, expCount:1, expNums:297, expScores:257, srow:1642451 |
| 21679 | chr17 | 16875307 | 16875616 | wgEncodeRegTfbsClusteredV3 | POU2F2 | score:251, expCount:1, expNums:125, expScores:251, srow:1642452 |
| 21679 | chr17 | 16875315 | 16875750 | wgEncodeRegTfbsClusteredV3 | MAX | score:242, expCount:1, expNums:296, expScores:242, srow:1642453 |
| 21679 | chr17 | 16875321 | 16875700 | wgEncodeRegTfbsClusteredV3 | NFYB | score:192, expCount:1, expNums:302, expScores:192, srow:1642454 |
| 21679 | chr17 | 16875322 | 16875625 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:143, expCount:1, expNums:117, expScores:143, srow:1642455 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 21679 | cellmeth_recounts | PrEC: 9, LNCaP: 0, DU145: 0 |  |
| 21679 | cellmeth_diffreps_PrECvsLNCaP | A=14, B=0, Length=360, Event=Down, log2FC=-Inf, padj=0.000432533284720616 |  |
| 21679 | cellmeth_diffreps_PrECvsDU145 | A=14, B=0, Length=360, Event=Down, log2FC=-Inf, padj=0.000506195974236337 |  |
| 21679 | cellexp | id=ENSG00000240505, name=TNFRSF13B, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 21679 | tcgameth | site:cg13203480, B=0.86, L=0.87, H=0.86 |  |
| 21679 | tcgaexp | gene=CRHR1, entrez=1394, pos=chr17:954315-43913194(+), B=36, L=21, M=25, H=18 |  |
| 21679 | tcgaexp | gene=MAPT, entrez=4137, pos=chr17:762281-44105699(+), B=1933, L=2382, M=2487, H=2583 |  |
| 21679 | tcgaexp | gene=NSF, entrez=4905, pos=chr17:266212-44834828(+), B=3355, L=5678, M=5410, H=5700 |  |
| 21679 | tcgaexp | gene=PLEKHM1, entrez=9842, pos=chr17:128328-43568146(-), B=1993, L=1631, M=1589, H=1418 |  |
| 21679 | tcgaexp | gene=LRRC37A, entrez=9884, pos=chr17:415627-44415160(+), B=924, L=896, M=971, H=940 |  |
| 21679 | tcgaexp | gene=TNFRSF13B, entrez=23495, pos=chr17:16832849-16875402(-), B=9, L=22, M=12, H=16 |  |
| 21679 | tcgaexp | gene=ARL17A, entrez=51326, pos=chr17:195721-44657088(-), B=200, L=195, M=210, H=230 |  |
| 21679 | tcgaexp | gene=LRRC37A4P, entrez=55073, pos=chr17:197706-43597889(-), B=1015, L=1512, M=1396, H=1450 |  |
| 21679 | tcgaexp | gene=CRHR1-IT1, entrez=147081, pos=chr17:1143726-43723595(+), B=197, L=211, M=215, H=223 |  |
| 21679 | tcgaexp | gene=SPPL2C, entrez=162540, pos=chr17:943102-43924438(+), B=0, L=0, M=0, H=0 |  |
| 21679 | tcgaexp | gene=ARHGAP27, entrez=201176, pos=chr17:86404-43511112(-), B=1570, L=1264, M=1273, H=1486 |  |
| 21679 | tcgaexp | gene=STH, entrez=246744, pos=chr17:790689-44077060(+), B=0, L=0, M=0, H=0 |  |
| 21679 | tcgaexp | gene=KANSL1, entrez=284058, pos=chr17:563498-44302740(-), B=3141, L=2594, M=2797, H=3017 |  |
| 21679 | tcgaexp | gene=MGC57346, entrez=401884, pos=chr17:1151952-43715329(+), B=601, L=581, M=566, H=598 |  |
| 21679 | tcgaexp | gene=LRRC37A2, entrez=474170, pos=chr17:197706-44633014(+), B=351, L=310, M=361, H=377 |  |
| 21679 | tcgaexp | gene=LOC644172, entrez=644172, pos=chr17:1188439-43679748(-), B=84, L=82, M=93, H=90 |  |
| 21679 | tcgaexp | gene=MAPT-AS1, entrez=100128977, pos=chr17:894694-43972879(-), B=1, L=2, M=4, H=2 |  |
| 21679 | tcgaexp | gene=MAPT-IT1, entrez=100130148, pos=chr17:891434-43976164(+), B=5, L=3, M=3, H=4 |  |