DMR 22253 chr17:79094601-79094750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr17:79094601-79094750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | AATK (0bp away) |
| ANODEV p-value | 0.00848658108978 |
| Frequencies | Benign: 6.0 (85.71%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22253 | AATK | 13518 | uc010dhz.3 | chr17 | 79091096 | 79096226 | - | 150 | 100.0 | 0.56 | 1 | 0.0 | E1 (0), I1 (0), E2 (82), I2 (18), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 22253 | AATK | 13518 | uc010dia.3 | chr17 | 79091096 | 79139872 | - | 150 | 100.0 | 0.56 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (100), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 22253 | AATK | 13518 | uc021ueu.1 | chr17 | 79091096 | 79105748 | - | 150 | 100.0 | 0.22 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (100), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 22253 | chr17 | 79094426 | 79094915 | wgEncodeRegDnaseClusteredV2 | 16 | score:594, srow:522087 |
| 22253 | chr17 | 79094609 | 79094609 | cosmic | COSM1610961 | srow:526064 |
| 22253 | chr17 | 79094609 | 79094609 | cosmic | COSM1610962 | srow:526065 |
| 22253 | chr17 | 79094618 | 79094618 | cosmic | COSM1130120 | srow:526066 |
| 22253 | chr17 | 79094692 | 79094692 | cosmic | COSM1189608 | srow:526067 |
| 22253 | chr17 | 79094692 | 79094692 | cosmic | COSM1189609 | srow:526068 |
| 22253 | chr17 | 79094705 | 79094705 | cosmic | COSM1136012 | srow:526069 |
| 22253 | chr17 | 79094705 | 79094705 | cosmic | COSM473524 | srow:526070 |
| 22253 | chr17 | 79094710 | 79094710 | cosmic | COSM1303488 | srow:526071 |
| 22253 | chr17 | 79094710 | 79094710 | cosmic | COSM1303489 | srow:526072 |
| 22253 | chr17 | 79094695 | 79094696 | phastConsElements100way | lod=13 | score:247, srow:3874159 |
| 22253 | chr17 | 79094719 | 79094720 | phastConsElements100way | lod=14 | score:255, srow:3874160 |
| 22253 | chr17 | 79094724 | 79094726 | phastConsElements100way | lod=24 | score:308, srow:3874161 |
| 22253 | chr17 | 79094731 | 79094738 | phastConsElements100way | lod=83 | score:431, srow:3874162 |
| 22253 | chr17 | 79094740 | 79094750 | phastConsElements100way | lod=131 | score:476, srow:3874163 |
| 22253 | chr17 | 79093077 | 79096677 | cpgIsland | CpG: 286 | length:3601, cpgNum:286, gcNum:2503, perCpg:15.9, perGc:69.5, obsExp:0.66, srow:11309 |
- 16 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 22253 | cellmeth_recounts | PrEC: 39, LNCaP: 237, DU145: 12 |  |
| 22253 | cellmeth_diffreps_PrECvsLNCaP | A=831, B=4880, Length=3140, Event=Up, log2FC=2.55, padj=0 |  |
| 22253 | cellmeth_diffreps_PrECvsDU145 | A=830, B=75, Length=2940, Event=Down, log2FC=-3.47, padj=0 |  |
| 22253 | cellmeth_diffreps_LNCaPvsDU145 | A=5219.08, B=70.16, Length=3120, Event=Down, log2FC=-6.22, padj=0 |  |
| 22253 | cellexp | id=ENSG00000181409, name=AATK, PrEC=79, str=55, LNCaP=818, str=333, DU145=96, str=30 |  |
| 22253 | tcgaexp | gene=AATK, entrez=9625, pos=chr17:79091096-79139872(-), B=264, L=219, M=259, H=305 |  |