DMR 22276 chr17:79826201-79826450 (250bp)

DMR Stats
Positionchr17:79826201-79826450 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesARHGDIA, AK293147 (0bp away)
ANODEV p-value0.00418771018037
FrequenciesBenign: 5.0 (71.43%), Low: 1.0 (16.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
22276 ARHGDIA 13552 uc002kbq.3 chr17 79825597 79829282 - 250 100.0 0.23 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) 100.0
22276 ARHGDIA 13552 uc010dig.2 chr17 79825597 79829282 - 250 100.0 0.17 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) 100.0
22276 AK293147 13551 uc021ufe.1 chr17 79825597 79826845 - 250 100.0 0.53 0 42.0 E1 (100) 100.0
22276 ARHGDIA 13552 uc021uff.1 chr17 79825597 79828790 - 250 100.0 5.44 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) 100.0
22276 ARHGDIA 13552 uc021ufg.1 chr17 79825597 79829282 - 250 100.0 4.65 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) 100.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
22276 chr17 79824926 79826435 wgEncodeRegDnaseClusteredV2 97 score:974, srow:522826
22276 chr17 79822816 79830454 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:72, expNums:11,32,41,61,62,78,104,105,123,124,130,131,146,147,163,168,191,192,206,207,228,229,256,259,275,279,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,445,446,447,461,465,520,521,522,523,524,525,526,527,563,564,577,583,585,596,599,602,610,613,616,619,622,632,633,634,637, expScores:219,224,216,249,381,218,656,521,293,257,256,379,333,345,209,381,255,245,141,259,198,367,181,243,270,284,120,372,142,235,506,176,157,297,235,216,219,251,127,122,532,267,85,186,267,149,223,310,161,198,230,236,199,365,218,217,200,156,393,188,194,133,141,124,165,300,102,214,268,271,266,117, srow:1815760
22276 chr17 79824835 79826401 wgEncodeRegTfbsClusteredV3 KDM5B score:405, expCount:1, expNums:31, expScores:254, srow:1815785
22276 chr17 79825776 79826391 wgEncodeRegTfbsClusteredV3 MYBL2 score:245, expCount:1, expNums:186, expScores:245, srow:1815818
22276 chr17 79825907 79826602 wgEncodeRegTfbsClusteredV3 HMGN3 score:205, expCount:1, expNums:501, expScores:184, srow:1815820
22276 chr17 79825935 79826524 wgEncodeRegTfbsClusteredV3 ELF1 score:223, expCount:2, expNums:50,217, expScores:223,135, srow:1815821
22276 chr17 79825970 79826409 wgEncodeRegTfbsClusteredV3 MYC score:279, expCount:3, expNums:487,489,620, expScores:279,180,146, srow:1815822
22276 chr17 79826019 79826606 wgEncodeRegTfbsClusteredV3 MAX score:613, expCount:2, expNums:223,511, expScores:267,261, srow:1815823
22276 chr17 79826021 79826290 wgEncodeRegTfbsClusteredV3 HDAC6 score:131, expCount:1, expNums:28, expScores:131, srow:1815824
22276 chr17 79826022 79826503 wgEncodeRegTfbsClusteredV3 E2F6 score:154, expCount:2, expNums:215,495, expScores:154,146, srow:1815825
22276 chr17 79826055 79826314 wgEncodeRegTfbsClusteredV3 FOSL2 score:243, expCount:1, expNums:176, expScores:243, srow:1815826
22276 chr17 79826062 79826489 wgEncodeRegTfbsClusteredV3 CHD2 score:204, expCount:3, expNums:288,380,427, expScores:204,125,159, srow:1815827
22276 chr17 79826070 79826525 wgEncodeRegTfbsClusteredV3 CCNT2 score:119, expCount:1, expNums:476, expScores:119, srow:1815828
22276 chr17 79826103 79826422 wgEncodeRegTfbsClusteredV3 POU2F2 score:227, expCount:1, expNums:106, expScores:227, srow:1815829
22276 chr17 79826109 79826544 wgEncodeRegTfbsClusteredV3 UBTF score:239, expCount:1, expNums:549, expScores:239, srow:1815830
22276 chr17 79826159 79826468 wgEncodeRegTfbsClusteredV3 NR3C1 score:165, expCount:1, expNums:58, expScores:165, srow:1815831
22276 chr17 79826177 79826712 wgEncodeRegTfbsClusteredV3 YY1 score:403, expCount:2, expNums:70,245, expScores:240,403, srow:1815832
22276 chr17 79826194 79826870 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:229, expCount:3, expNums:195,232,260, expScores:229,130,154, srow:1815833
22276 chr17 79826225 79826614 wgEncodeRegTfbsClusteredV3 ETS1 score:206, expCount:1, expNums:218, expScores:206, srow:1815834
22276 chr17 79826276 79826645 wgEncodeRegTfbsClusteredV3 MAZ score:270, expCount:1, expNums:512, expScores:270, srow:1815835
22276 chr17 79826314 79826677 wgEncodeRegTfbsClusteredV3 TEAD4 score:271, expCount:1, expNums:240, expScores:271, srow:1815836
22276 chr17 79826335 79826610 wgEncodeRegTfbsClusteredV3 TAL1 score:209, expCount:1, expNums:542, expScores:209, srow:1815837
22276 chr17 79826340 79826852 wgEncodeRegTfbsClusteredV3 GABPA score:236, expCount:1, expNums:220, expScores:177, srow:1815838
22276 chr17 79826360 79826615 wgEncodeRegTfbsClusteredV3 GATA2 score:207, expCount:1, expNums:221, expScores:207, srow:1815839
22276 chr17 79826382 79826625 wgEncodeRegTfbsClusteredV3 EGR1 score:148, expCount:1, expNums:216, expScores:148, srow:1815840
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  • 25 of 33 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
22276 cellmeth_recounts PrEC: 47, LNCaP: 24, DU145: 0
22276 cellmeth_diffreps_PrECvsLNCaP A=69, B=18, Length=400, Event=Down, log2FC=-1.94, padj=1.03838484522092e-06
22276 cellmeth_diffreps_PrECvsDU145 A=70, B=0, Length=520, Event=Down, log2FC=-Inf, padj=0
22276 cellmeth_diffreps_LNCaPvsDU145 A=19.24, B=0, Length=340, Event=Down, log2FC=-Inf, padj=5.38176525022975e-05
22276 cellexp id=ENSG00000141522, name=ARHGDIA, PrEC=22555, str=9130, LNCaP=11981, str=10725, DU145=9280, str=11954
22276 cellexp id=ENSG00000262413, name=RP11-498C9.3, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
22276 tcgameth site:cg25141766, B=0.82, L=0.62, H=0.64
22276 tcgaexp gene=ARHGDIA, entrez=396, pos=chr17:79825597-79829282(-), B=15416, L=22921, M=21725, H=19871