DMR 22309 chr17:80653901-80654050 (150bp)
| DMR Stats | |
|---|---|
| Position | chr17:80653901-80654050 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | RAB40B (0bp away) |
| ANODEV p-value | 0.0177823298597 |
| Frequencies | Benign: 5.0 (71.43%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22309 | RAB40B | 13589 | uc002kfs.3 | chr17 | 80614943 | 80654434 | - | 150 | 100.0 | 0.17 | 1 | 77.33 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 22309 | RAB40B | 13589 | uc002kft.3 | chr17 | 80614943 | 80656598 | - | 150 | 100.0 | 0.45 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 22309 | chr17 | 80653336 | 80655335 | cpgShore | — | values(x.gr)[overs$srow, ]:20872 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 22309 | cellmeth_recounts | PrEC: 13, LNCaP: 49, DU145: 29 |  |
| 22309 | cellmeth_diffreps_LNCaPvsDU145 | A=403.03, B=19.64, Length=1660, Event=Down, log2FC=-4.36, padj=0 |  |
| 22309 | cellexp | id=ENSG00000141542, name=RAB40B, PrEC=749, str=983, LNCaP=1534, str=1400, DU145=412, str=198 |  |
| 22309 | tcgaexp | gene=RAB40B, entrez=10966, pos=chr17:80614943-80656598(-), B=1156, L=1260, M=1150, H=1126 |  |