DMR 22905 chr19:10745401-10745600 (200bp)

DMR Stats
Positionchr19:10745401-10745600 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesSLC44A2 (0bp away)
ANODEV p-value0.00444301457975
FrequenciesBenign: 7.0 (100.0%), Low: 2.0 (33.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
22905 SLC44A2 14452 uc002mpe.4 chr19 10713121 10755235 + 200 100.0 0.01 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (15.5), E11 (66), I11 (19), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) 0.0
22905 SLC44A2 14452 uc002mpf.3 chr19 10736171 10755235 + 200 100.0 0.01 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (15.5), E11 (66), I11 (19), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) 0.0
22905 SLC44A2 14452 uc002mpg.1 chr19 10745432 10754588 + 169 84.5 0.01 0 100.0 E1 (66), I1 (19), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
22905 chr19 10745166 10745575 wgEncodeRegDnaseClusteredV2 4 score:278, srow:564229
22905 chr19 10745459 10745480 tfbsConsSites V$OLF1_01 score:802, zScore:1.8, srow:2428660
22905 chr19 10745481 10745494 tfbsConsSites V$ATF_01 score:865, zScore:2.38, srow:2428661
22905 chr19 10745536 10745542 tfbsConsSites V$NKX25_01 score:969, zScore:2.07, srow:2428662
22905 chr19 10745468 10745468 cosmic COSM990656 srow:567396
22905 chr19 10745531 10745531 cosmic COSM180679 srow:567397
22905 chr19 10745557 10745557 cosmic COSM990657 srow:567398
22905 chr19 10745429 10745432 phastConsElements100way lod=67 score:410, srow:4171847
22905 chr19 10745434 10745456 phastConsElements100way lod=224 score:529, srow:4171848
22905 chr19 10745464 10745468 phastConsElements100way lod=42 score:363, srow:4171849
22905 chr19 10745470 10745471 phastConsElements100way lod=38 score:354, srow:4171850
22905 chr19 10745473 10745477 phastConsElements100way lod=30 score:330, srow:4171851
22905 chr19 10745479 10745480 phastConsElements100way lod=44 score:368, srow:4171852
22905 chr19 10745482 10745483 phastConsElements100way lod=19 score:285, srow:4171853
22905 chr19 10745485 10745486 phastConsElements100way lod=35 score:345, srow:4171854
22905 chr19 10745489 10745495 phastConsElements100way lod=35 score:345, srow:4171855
22905 chr19 10745500 10745504 phastConsElements100way lod=53 score:387, srow:4171856
22905 chr19 10745506 10745516 phastConsElements100way lod=137 score:481, srow:4171857
22905 chr19 10745518 10745519 phastConsElements100way lod=37 score:351, srow:4171858
22905 chr19 10745522 10745525 phastConsElements100way lod=22 score:300, srow:4171859
22905 chr19 10745527 10745528 phastConsElements100way lod=33 score:340, srow:4171860
22905 chr19 10745530 10745540 phastConsElements100way lod=93 score:442, srow:4171861
22905 chr19 10745545 10745549 phastConsElements100way lod=67 score:410, srow:4171862
22905 chr19 10745551 10745558 phastConsElements100way lod=119 score:467, srow:4171863
22905 chr19 10745560 10745569 phastConsElements100way lod=129 score:475, srow:4171864
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Omics Overlaps

Dmrid Omic Set Data Plot
22905 cellmeth_recounts PrEC: 29, LNCaP: 8, DU145: 3
22905 cellmeth_diffreps_PrECvsLNCaP A=43, B=8, Length=380, Event=Down, log2FC=-2.43, padj=1.54233045654554e-05
22905 cellmeth_diffreps_PrECvsDU145 A=43, B=2, Length=400, Event=Down, log2FC=-4.43, padj=1.3785269431091e-09
22905 cellexp id=ENSG00000129353, name=SLC44A2, PrEC=11248, str=12217, LNCaP=7453, str=10554, DU145=4221, str=4712
22905 tcgameth site:cg23083665, B=0.74, L=0.78, H=0.78
22905 tcgaexp gene=SLC44A2, entrez=57153, pos=chr19:10713121-10755235(+), B=11340, L=10449, M=9929, H=10328