DMR 23412 chr19:58606951-58607100 (150bp)

DMR Stats
Positionchr19:58606951-58607100 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesZSCAN18 (0bp away)
ANODEV p-value0.0181354391041
FrequenciesBenign: 6.0 (85.71%), Low: 2.0 (33.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
23412 ZSCAN18 15916 uc002qrh.2 chr19 58595209 58609730 - 150 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
23412 ZSCAN18 15916 uc002qri.2 chr19 58595209 58609730 - 150 100.0 0.1 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
23412 ZSCAN18 15916 uc002qrl.2 chr19 58595210 58609730 - 150 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) 0.0
23412 ZSCAN18 15916 uc010yhs.1 chr19 58595209 58609730 - 150 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
23412 ZSCAN18 15916 uc010yht.1 chr19 58595209 58629793 - 150 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 5 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
23412 chr19 58606386 58607315 wgEncodeRegDnaseClusteredV2 26 score:371, srow:592420
23412 chr19 58605339 58607338 cpgShelf — values(x.gr)[overs$srow, ]:21701
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
23412 cellmeth_recounts PrEC: 21, LNCaP: 1, DU145: 0
23412 cellmeth_diffreps_PrECvsLNCaP A=32, B=1, Length=380, Event=Down, log2FC=-5, padj=9.42329707461185e-08
23412 cellmeth_diffreps_PrECvsDU145 A=32, B=0, Length=380, Event=Down, log2FC=-Inf, padj=3.10684099919606e-09
23412 cellexp id=ENSG00000121413, name=ZSCAN18, PrEC=851, str=1486, LNCaP=1373, str=329, DU145=609, str=467
23412 tcgameth site:cg21890309, B=0.99, L=0.99, H=0.98
23412 tcgaexp gene=ZSCAN18, entrez=65982, pos=chr19:58595209-58629793(-), B=4665, L=4089, M=3531, H=3556