DMR 235 chr1:41101201-41101350 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:41101201-41101350 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | RIMS3 (0bp away) |
| ANODEV p-value | 0.00212458822314 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235 | RIMS3 | 721 | uc001cfu.1 | chr1 | 41086352 | 41131324 | - | 150 | 100.0 | 0.44 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 235 | RIMS3 | 721 | uc001cfv.1 | chr1 | 41086352 | 41131324 | - | 150 | 100.0 | 0.33 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 235 | chr1 | 41101026 | 41101270 | wgEncodeRegDnaseClusteredV2 | 24 | score:443, srow:32603 |
| 235 | chr1 | 41101286 | 41101455 | wgEncodeRegDnaseClusteredV2 | 3 | score:350, srow:32604 |
| 235 | chr1 | 41100866 | 41101265 | wgEncodeRegTfbsClusteredV3 | FOS | score:157, expCount:1, expNums:457, expScores:157, srow:115881 |
| 235 | chr1 | 41101287 | 41101882 | wgEncodeRegTfbsClusteredV3 | ZNF263 | score:264, expCount:1, expNums:368, expScores:264, srow:115882 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 235 | cellmeth_recounts | PrEC: 1, LNCaP: 0, DU145: 0 |  |
| 235 | cellexp | id=ENSG00000117016, name=RIMS3, PrEC=237, str=1278, LNCaP=300, str=283, DU145=1571, str=918 |  |
| 235 | tcgaexp | gene=RIMS3, entrez=9783, pos=chr1:41086352-41131324(-), B=724, L=372, M=331, H=246 |  |
| 235 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |