DMR 24430 chr22:41923251-41923400 (150bp)

DMR Stats
Positionchr22:41923251-41923400 (View on UCSC)
Width150bp
Genomic Contextexon
Nearest GenesACO2, POLR3H (0bp away)
ANODEV p-value4.94768888667e-05
FrequenciesBenign: 7.0 (100.0%), Low: 2.0 (33.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24430 ACO2 19566 uc003bac.3 chr22 41865129 41924993 + 150 100.0 0.98 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (27.33), E16 (72.67), I16 (0), E17 (0), I17 (0), E18 (0) 0.0
24430 POLR3H 19567 uc003baf.3 chr22 41921803 41940476 - 150 100.0 0.16 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (100) 0.0
24430 POLR3H 19567 uc003bag.2 chr22 41921803 41940479 - 150 100.0 0.16 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (100) 0.0
24430 POLR3H 19567 uc003bai.2 chr22 41921803 41940479 - 150 100.0 0.43 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (100) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24430 chr22 41923066 41923275 wgEncodeRegDnaseClusteredV2 3 score:371, srow:773107
24430 chr22 41923326 41923650 wgEncodeRegDnaseClusteredV2 4 score:295, srow:773108
24430 chr22 41920734 41924866 wgEncodeRegTfbsClusteredV3 POLR2A score:626, expCount:30, expNums:61,62,78,104,105,124,130,131,146,147,163,191,192,228,229,249,256,308,328,336,340,402,445,447,523,526,527,602,622,634, expScores:253,238,216,424,405,241,293,292,249,372,275,254,210,193,412,143,269,232,206,190,222,400,89,255,176,478,146,203,197,210, srow:2697268
24430 chr22 41922716 41923324 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:98, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:1000,1000,752,1000,695,545,1000,875,1000,114,461,1000,909,908,1000,592,589,250,1000,1000,1000,360,270,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,882,1000,656,927,299,413,916,1000,1000,1000,1000,1000,1000,940,839,1000,1000,1000,1000,1000,1000,1000,1000,680,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,963,137,1000,1000,1000,1000,877,717,720,1000,235,1000,1000,1000,1000,1000,1000,1000,1000,810,970,466,1000,1000,657,1000,1000,867,1000,739, srow:2697277
24430 chr22 41922854 41923293 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:109, expCount:1, expNums:250, expScores:109, srow:2697287
24430 chr22 41923303 41923312 tfbsConsSites V$HMX1_01 score:853, zScore:2.39, srow:3253617
24430 chr22 41923368 41923385 tfbsConsSites V$AHR_01 score:824, zScore:2.71, srow:3253618
24430 chr22 41923381 41923393 tfbsConsSites V$SP1_Q6 score:906, zScore:1.81, srow:3253619
24430 chr22 41923335 41923335 cosmic COSM1682296 srow:795195
24430 chr22 41923336 41923336 cosmic COSM580199 srow:795196
24430 chr22 41923345 41923345 cosmic COSM419531 srow:795197
24430 chr22 41923391 41923391 cosmic COSM1034642 srow:795198
24430 chr22 41923399 41923399 cosmic COSM1484267 srow:795199
24430 chr22 41922272 41923822 oreganno OREG0026589 id:OREG0026589, srow:15327
24430 chr22 41923289 41923296 phastConsElements100way lod=74 score:420, srow:5626512
24430 chr22 41923298 41923317 phastConsElements100way lod=217 score:526, srow:5626513
24430 chr22 41923319 41923320 phastConsElements100way lod=43 score:366, srow:5626514
24430 chr22 41923322 41923323 phastConsElements100way lod=38 score:354, srow:5626515
24430 chr22 41923325 41923332 phastConsElements100way lod=112 score:461, srow:5626516
24430 chr22 41923334 41923335 phastConsElements100way lod=43 score:366, srow:5626517
24430 chr22 41923337 41923344 phastConsElements100way lod=116 score:464, srow:5626518
24430 chr22 41923346 41923356 phastConsElements100way lod=141 score:483, srow:5626519
24430 chr22 41923358 41923359 phastConsElements100way lod=35 score:345, srow:5626520
24430 chr22 41923361 41923362 phastConsElements100way lod=35 score:345, srow:5626521
24430 chr22 41923364 41923371 phastConsElements100way lod=108 score:457, srow:5626522
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  • 25 of 27 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24430 cellmeth_recounts PrEC: 15, LNCaP: 6, DU145: 5
24430 cellmeth_diffreps_PrECvsDU145 A=22, B=3, Length=240, Event=Down, log2FC=-2.87, padj=0.00204221817904448
24430 cellexp id=ENSG00000100412, name=ACO2, PrEC=5898, str=4081, LNCaP=5895, str=4702, DU145=3988, str=4078
24430 cellexp id=ENSG00000100413, name=POLR3H, PrEC=3353, str=1260, LNCaP=4846, str=4096, DU145=2165, str=2198
24430 tcgameth site:cg01752978, B=0.83, L=0.83, H=0.8
24430 tcgaexp gene=ACO2, entrez=50, pos=chr22:41865129-41924993(+), B=9105, L=9685, M=8849, H=8459
24430 tcgaexp gene=POLR3H, entrez=171568, pos=chr22:41921803-41940479(-), B=3029, L=3819, M=3840, H=3534