DMR 245 chr1:43167101-43167300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:43167101-43167300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | YBX1 (0bp away) |
| ANODEV p-value | 0.0374285748553 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 0.0 (0.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245 | YBX1 | 746 | uc001chs.3 | chr1 | 43148066 | 43168020 | + | 200 | 100.0 | 1.24 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0) | 100.0 |
- 1 genes
Feature Overlaps
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 245 | cellmeth_recounts | PrEC: 1, LNCaP: 0, DU145: 1 |  |
| 245 | cellexp | id=ENSG00000065978, name=YBX1, PrEC=30121, str=10321, LNCaP=18281, str=18201, DU145=15289, str=13698 |  |
| 245 | tcgaexp | gene=YBX1, entrez=4904, pos=chr1:43148066-43168020(+), B=15301, L=15160, M=14698, H=15187 |  |
| 245 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |