DMR 24873 chr1:1167951-1168200 (250bp)

DMR Stats
Positionchr1:1167951-1168200 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesB3GALT6 (0bp away)
ANODEV p-value0.0274000105313
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24873 B3GALT6 52 uc001adk.3 chr1 1167629 1170420 + 250 100.0 0.17 0 71.2 E1 (100) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24873 chr1 1167721 1168215 wgEncodeRegDnaseClusteredV2 27 score:1000, srow:452
24873 chr1 1166645 1168226 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:63, expNums:32,61,62,78,104,105,123,124,130,131,146,147,163,168,191,192,206,207,228,229,259,275,283,306,307,326,328,330,332,334,336,338,340,362,366,402,445,446,461,465,520,521,522,523,524,525,563,564,577,583,585,596,599,602,610,613,616,619,622,632,633,634,637, expScores:268,1000,486,354,728,1000,358,682,452,416,268,390,620,346,459,1000,393,881,629,1000,311,400,398,263,229,936,780,285,559,183,1000,573,429,118,228,916,116,408,226,1000,456,420,630,409,208,994,737,570,295,834,608,213,408,423,163,188,249,343,884,969,426,432,605, srow:2346
24873 chr1 1167243 1168240 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:9, expNums:223,278,296,352,395,439,460,511,576, expScores:193,371,318,327,210,134,399,477,367, srow:2389
24873 chr1 1167477 1168288 wgEncodeRegTfbsClusteredV3 E2F6 score:1000, expCount:3, expNums:215,386,495, expScores:366,524,205, srow:2413
24873 chr1 1167533 1168095 wgEncodeRegTfbsClusteredV3 E2F1 score:1000, expCount:1, expNums:390, expScores:1000, srow:2415
24873 chr1 1167537 1167993 wgEncodeRegTfbsClusteredV3 PHF8 score:723, expCount:1, expNums:30, expScores:723, srow:2416
24873 chr1 1167654 1168276 wgEncodeRegTfbsClusteredV3 MYC score:972, expCount:16, expNums:347,382,485,486,487,488,489,490,560,575,600,617,620,623,624,626, expScores:129,243,168,296,402,299,653,167,349,324,163,146,183,277,972,462, srow:2419
24873 chr1 1167660 1168183 wgEncodeRegTfbsClusteredV3 HDAC1 score:254, expCount:1, expNums:26, expScores:254, srow:2420
24873 chr1 1167775 1168044 wgEncodeRegTfbsClusteredV3 USF1 score:221, expCount:2, expNums:118,265, expScores:195,221, srow:2421
24873 chr1 1167863 1168302 wgEncodeRegTfbsClusteredV3 CBX3 score:262, expCount:1, expNums:211, expScores:262, srow:2422
24873 chr1 1167875 1168153 wgEncodeRegTfbsClusteredV3 SETDB1 score:514, expCount:1, expNums:533, expScores:514, srow:2423
24873 chr1 1168004 1168259 wgEncodeRegTfbsClusteredV3 ZBTB33 score:119, expCount:1, expNums:246, expScores:119, srow:2424
24873 chr1 1168002 1168020 tfbsConsSites V$SEF1_C score:745, zScore:2.16, srow:746
24873 chr1 1168003 1168010 tfbsConsSites V$USF_C score:945, zScore:1.9, srow:747
24873 chr1 1168005 1168026 tfbsConsSites V$HEN1_01 score:807, zScore:2.18, srow:748
24873 chr1 1168018 1168038 tfbsConsSites V$NRSF_01 score:726, zScore:1.98, srow:749
24873 chr1 1168053 1168071 tfbsConsSites V$HNF4_01 score:809, zScore:1.7, srow:750
24873 chr1 1168087 1168106 tfbsConsSites V$MYCMAX_03 score:802, zScore:1.99, srow:751
24873 chr1 1168089 1168105 tfbsConsSites V$XBP1_01 score:792, zScore:1.86, srow:752
24873 chr1 1168090 1168103 tfbsConsSites V$MYCMAX_01 score:850, zScore:2.5, srow:753
24873 chr1 1168097 1168114 tfbsConsSites V$IRF7_01 score:820, zScore:2.11, srow:754
24873 chr1 1168168 1168183 tfbsConsSites V$ARNT_01 score:844, zScore:1.83, srow:755
24873 chr1 1168170 1168187 tfbsConsSites V$AHR_01 score:803, zScore:2.34, srow:756
24873 chr1 1168120 1168120 cosmic COSM675155 srow:428
24873 chr1 1168187 1168187 cosmic COSM324791 srow:429
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  • 25 of 47 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24873 cellmeth_recounts PrEC: 76, LNCaP: 1639, DU145: 17
24873 cellmeth_diffreps_PrECvsLNCaP A=2094, B=5608, Length=1280, Event=Up, log2FC=1.42, padj=0
24873 cellmeth_diffreps_PrECvsDU145 A=2459, B=61, Length=2260, Event=Down, log2FC=-5.33, padj=0
24873 cellmeth_diffreps_LNCaPvsDU145 A=7565.63, B=74.83, Length=4420, Event=Down, log2FC=-6.66, padj=0
24873 cellexp id=ENSG00000176022, name=B3GALT6, PrEC=1331, str=1813, LNCaP=5670, str=4604, DU145=1966, str=1484
24873 tcgameth site:cg19945840, B=0.49, L=0.63, H=0.59
24873 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24873 tcgaexp gene=B3GALT6, entrez=126792, pos=chr1:1167629-1170420(+), B=1240, L=2122, M=2201, H=1928
24873 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305