DMR 24898 chr1:2218001-2218150 (150bp)

DMR Stats
Positionchr1:2218001-2218150 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesSKI (0bp away)
ANODEV p-value0.00544803472695
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24898 SKI 98 uc001aja.4 chr1 2160134 2241652 + 150 100.0 10.07 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields

Omics Overlaps

Dmrid Omic Set Data Plot
24898 cellmeth_recounts PrEC: 25, LNCaP: 4, DU145: 4
24898 cellmeth_diffreps_PrECvsLNCaP A=77, B=6, Length=740, Event=Down, log2FC=-3.68, padj=0
24898 cellmeth_diffreps_PrECvsDU145 A=77, B=8, Length=740, Event=Down, log2FC=-3.27, padj=1.41605150066516e-13
24898 cellexp id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843
24898 tcgaexp gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668
24898 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24898 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305