DMR 249 chr1:44595701-44595900 (200bp)

DMR Stats
Positionchr1:44595701-44595900 (View on UCSC)
Width200bp
Genomic Context3' end
Nearest GenesKLF17 (0bp away)
ANODEV p-value0.0253444693493
FrequenciesBenign: 5.0 (71.43%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
249 KLF17 783 uc001clp.3 chr1 44584522 44600809 + 200 100.0 0.53 0 0.0 E1 (0), I1 (0), E2 (84), I2 (16.5), E3 (0), I3 (0), E4 (0) 0.0
249 KLF17 783 uc009vxf.1 chr1 44514030 44595868 + 168 84.0 0.53 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (84) 100.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
249 chr1 44595702 44595723 tfbsConsSites V$HEN1_01 score:778, zScore:1.75, srow:106710
249 chr1 44595703 44595720 tfbsConsSites V$AP4_01 score:830, zScore:1.96, srow:106711
249 chr1 44595707 44595718 tfbsConsSites V$AREB6_03 score:885, zScore:1.83, srow:106712
249 chr1 44595843 44595853 tfbsConsSites V$BACH2_01 score:939, zScore:2.95, srow:106713
249 chr1 44595843 44595853 tfbsConsSites V$AP1_Q4 score:932, zScore:2.3, srow:106714
249 chr1 44595849 44595860 tfbsConsSites V$NGFIC_01 score:838, zScore:1.81, srow:106715
249 chr1 44595863 44595875 tfbsConsSites V$AREB6_01 score:973, zScore:3.21, srow:106716
249 chr1 44595785 44595785 cosmic COSM132717 srow:29864
249 chr1 44595807 44595807 cosmic COSM1342951 srow:29865
249 chr1 44595807 44595807 cosmic COSM1342952 srow:29866
249 chr1 44595813 44595813 cosmic COSM1342953 srow:29867
249 chr1 44595813 44595813 cosmic COSM1342954 srow:29868
249 chr1 44595815 44595815 cosmic COSM138195 srow:29869
249 chr1 44595828 44595828 cosmic COSM909989 srow:29870
249 chr1 44595828 44595828 cosmic COSM909988 srow:29871
249 chr1 44595783 44595791 phastConsElements100way lod=23 score:304, srow:194800
249 chr1 44595795 44595797 phastConsElements100way lod=25 score:312, srow:194801
249 chr1 44595802 44595803 phastConsElements100way lod=13 score:247, srow:194802
249 chr1 44595808 44595842 phastConsElements100way lod=149 score:489, srow:194803
249 chr1 44595844 44595851 phastConsElements100way lod=44 score:368, srow:194804
249 chr1 44595856 44595872 phastConsElements100way lod=107 score:456, srow:194805
  • 21 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
249 cellmeth_recounts PrEC: 8, LNCaP: 1, DU145: 3
249 cellmeth_diffreps_PrECvsLNCaP A=12, B=0, Length=340, Event=Down, log2FC=-Inf, padj=0.00157949948552458
249 cellmeth_diffreps_PrECvsDU145 A=12, B=0, Length=220, Event=Down, log2FC=-Inf, padj=0.00174045876043459
249 cellexp id=ENSG00000171872, name=KLF17, PrEC=0, str=2, LNCaP=0, str=0, DU145=71, str=90
249 tcgaexp gene=KLF17, entrez=128209, pos=chr1:44514030-44600809(+), B=7, L=5, M=4, H=5
249 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305