DMR Stats
Positionchr1:2229351-2229500 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesSKI (0bp away)
ANODEV p-value0.00101187467939
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24900 SKI 98 uc001aja.4 chr1 2160134 2241652 + 150 100.0 0.25 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24900 chr1 2229168 2229487 wgEncodeRegTfbsClusteredV3 YY1 score:113, expCount:1, expNums:551, expScores:113, srow:7077
24900 chr1 2228311 2230310 cpgShelf values(x.gr)[overs$srow, ]:172
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24900 cellmeth_recounts PrEC: 21, LNCaP: 26, DU145: 9
24900 cellmeth_diffreps_PrECvsDU145 A=347, B=19, Length=1140, Event=Down, log2FC=-4.19, padj=0
24900 cellmeth_diffreps_LNCaPvsDU145 A=91.94, B=12.16, Length=740, Event=Down, log2FC=-2.92, padj=5.72484404733085e-14
24900 cellexp id=ENSG00000157933, name=SKI, PrEC=6991, str=5566, LNCaP=6867, str=7040, DU145=2963, str=2843
24900 tcgaexp gene=SKI, entrez=6497, pos=chr1:2160134-2241652(+), B=5692, L=5511, M=5343, H=5668
24900 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24900 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305