DMR 24902 chr1:2387451-2387600 (150bp)

DMR Stats
Positionchr1:2387451-2387600 (View on UCSC)
Width150bp
Genomic Contextintergenic
Nearest GenesPLCH2 (20153bp away)
ANODEV p-value3.72077391906e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24902 chr1 2387321 2387550 wgEncodeRegDnaseClusteredV2 14 score:744, srow:1593
24902 chr1 2387249 2387718 wgEncodeRegTfbsClusteredV3 POLR2A score:217, expCount:1, expNums:249, expScores:217, srow:7549
24902 chr1 2387353 2387722 wgEncodeRegTfbsClusteredV3 CTCF score:190, expCount:3, expNums:18,597,635, expScores:124,190,159, srow:7550
24902 chr1 2387457 2387489 phastConsElements100way lod=77 score:423, srow:10561
24902 chr1 2385670 2387669 cpgShore — values(x.gr)[overs$srow, ]:317
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24902 cellmeth_recounts PrEC: 4, LNCaP: 6, DU145: 4
24902 cellmeth_diffreps_PrECvsLNCaP A=219, B=7, Length=720, Event=Down, log2FC=-4.97, padj=0
24902 cellmeth_diffreps_PrECvsDU145 A=219, B=11, Length=720, Event=Down, log2FC=-4.32, padj=0
24902 cellexp id=ENSG00000149527, name=PLCH2, PrEC=15605, str=15786, LNCaP=478, str=150, DU145=59, str=40
24902 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24902 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305