DMR 24903 chr1:2451951-2452350 (400bp)
| DMR Stats | |
|---|---|
| Position | chr1:2451951-2452350 (View on UCSC) |
| Width | 400bp |
| Genomic Context | exon |
| Nearest Genes | PANK4 (0bp away) |
| ANODEV p-value | 0.000314198928299 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24903 | PANK4 | 105 | uc001ajm.1 | chr1 | 2439975 | 2458035 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (1.5), E4 (46), I4 (52.75), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0) | 0.0 |
| 24903 | PANK4 | 105 | uc010nza.1 | chr1 | 2439975 | 2458035 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (19.75), E4 (27.75), I4 (52.75), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24903 | chr1 | 2452195 | 2452208 | tfbsConsSites | V$GATA1_02 | score:865, zScore:2.29, srow:4146 |
| 24903 | chr1 | 2452228 | 2452242 | tfbsConsSites | V$ISRE_01 | score:809, zScore:2.18, srow:4147 |
| 24903 | chr1 | 2452260 | 2452275 | tfbsConsSites | V$GRE_C | score:826, zScore:2.02, srow:4148 |
| 24903 | chr1 | 2452313 | 2452329 | tfbsConsSites | V$XBP1_01 | score:812, zScore:2.23, srow:4149 |
| 24903 | chr1 | 2452316 | 2452338 | tfbsConsSites | V$PPARG_02 | score:699, zScore:1.99, srow:4150 |
| 24903 | chr1 | 2452158 | 2452158 | cosmic | COSM237917 | srow:1855 |
| 24903 | chr1 | 2452199 | 2452199 | cosmic | COSM1626945 | srow:1856 |
| 24903 | chr1 | 2452247 | 2452247 | cosmic | COSM72063 | srow:1857 |
| 24903 | chr1 | 2452249 | 2452249 | cosmic | COSM1340887 | srow:1858 |
| 24903 | chr1 | 2452259 | 2452259 | cosmic | COSM425818 | srow:1859 |
| 24903 | chr1 | 2452293 | 2452293 | cosmic | COSM178369 | srow:1860 |
| 24903 | chr1 | 2452297 | 2452297 | cosmic | COSM1162227 | srow:1861 |
| 24903 | chr1 | 2452304 | 2452304 | cosmic | COSM1185275 | srow:1862 |
| 24903 | chr1 | 2452157 | 2452167 | phastConsElements100way | lod=117 | score:465, srow:11206 |
| 24903 | chr1 | 2452169 | 2452170 | phastConsElements100way | lod=32 | score:337, srow:11207 |
| 24903 | chr1 | 2452172 | 2452173 | phastConsElements100way | lod=35 | score:345, srow:11208 |
| 24903 | chr1 | 2452175 | 2452176 | phastConsElements100way | lod=30 | score:330, srow:11209 |
| 24903 | chr1 | 2452178 | 2452179 | phastConsElements100way | lod=27 | score:320, srow:11210 |
| 24903 | chr1 | 2452181 | 2452194 | phastConsElements100way | lod=142 | score:484, srow:11211 |
| 24903 | chr1 | 2452196 | 2452197 | phastConsElements100way | lod=28 | score:323, srow:11212 |
| 24903 | chr1 | 2452199 | 2452203 | phastConsElements100way | lod=67 | score:410, srow:11213 |
| 24903 | chr1 | 2452205 | 2452215 | phastConsElements100way | lod=123 | score:470, srow:11214 |
| 24903 | chr1 | 2452217 | 2452224 | phastConsElements100way | lod=87 | score:436, srow:11215 |
| 24903 | chr1 | 2452226 | 2452233 | phastConsElements100way | lod=102 | score:451, srow:11216 |
| 24903 | chr1 | 2452235 | 2452242 | phastConsElements100way | lod=97 | score:446, srow:11217 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24903 | cellmeth_recounts | PrEC: 50, LNCaP: 55, DU145: 4 |  |
| 24903 | cellmeth_diffreps_PrECvsLNCaP | A=634, B=183, Length=1160, Event=Down, log2FC=-1.79, padj=0 |  |
| 24903 | cellmeth_diffreps_PrECvsLNCaP | A=181, B=81, Length=400, Event=Down, log2FC=-1.16, padj=2.96197327119751e-08 |  |
| 24903 | cellmeth_diffreps_PrECvsDU145 | A=1057, B=47, Length=2540, Event=Down, log2FC=-4.49, padj=0 |  |
| 24903 | cellmeth_diffreps_LNCaPvsDU145 | A=195.64, B=17.77, Length=1040, Event=Down, log2FC=-3.46, padj=0 |  |
| 24903 | cellmeth_diffreps_LNCaPvsDU145 | A=198.84, B=20.58, Length=1240, Event=Down, log2FC=-3.27, padj=0 |  |
| 24903 | cellexp | id=ENSG00000157881, name=PANK4, PrEC=1861, str=1352, LNCaP=2582, str=1500, DU145=1364, str=1198 |  |
| 24903 | tcgameth | site:cg24046159, B=0.87, L=0.85, H=0.85 |  |
| 24903 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24903 | tcgaexp | gene=PANK4, entrez=55229, pos=chr1:2439975-2458035(-), B=1312, L=1201, M=1131, H=1176 |  |
| 24903 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |