DMR 24944 chr1:6480301-6481000 (700bp)

DMR Stats
Positionchr1:6480301-6481000 (View on UCSC)
Width700bp
Genomic Contextpromoter
Nearest GenesHES2 (0bp away)
ANODEV p-value2.58454873997e-05
FrequenciesBenign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24944 HES2 150 uc001amw.3 chr1 6472498 6484730 - 700 100.0 0.2 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24944 chr1 6479606 6481190 wgEncodeRegDnaseClusteredV2 72 score:1000, srow:5029
24944 chr1 6478222 6481074 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:7, expNums:6,13,19,25,36,38,43, expScores:324,355,93,303,246,192,273, srow:14021
24944 chr1 6479607 6480379 wgEncodeRegTfbsClusteredV3 POLR2A score:917, expCount:18, expNums:61,62,78,163,168,206,340,362,402,563,564,577,596,613,619,632,633,634, expScores:687,363,694,272,377,208,271,105,384,402,262,155,409,188,342,405,771,203, srow:14024
24944 chr1 6479849 6480558 wgEncodeRegTfbsClusteredV3 TCF7L2 score:636, expCount:3, expNums:363,414,581, expScores:465,297,169, srow:14026
24944 chr1 6479876 6480391 wgEncodeRegTfbsClusteredV3 TFAP2C score:231, expCount:1, expNums:370, expScores:231, srow:14027
24944 chr1 6480012 6480401 wgEncodeRegTfbsClusteredV3 MAX score:207, expCount:1, expNums:223, expScores:207, srow:14030
24944 chr1 6480040 6480409 wgEncodeRegTfbsClusteredV3 MAZ score:190, expCount:1, expNums:512, expScores:190, srow:14031
24944 chr1 6480204 6480603 wgEncodeRegTfbsClusteredV3 FOS score:145, expCount:1, expNums:457, expScores:145, srow:14032
24944 chr1 6480232 6480675 wgEncodeRegTfbsClusteredV3 GATA2 score:263, expCount:1, expNums:459, expScores:263, srow:14033
24944 chr1 6480548 6480997 wgEncodeRegTfbsClusteredV3 POLR2A score:287, expCount:1, expNums:577, expScores:287, srow:14034
24944 chr1 6480610 6481019 wgEncodeRegTfbsClusteredV3 MYC score:228, expCount:2, expNums:487,575, expScores:228,219, srow:14035
24944 chr1 6480651 6481054 wgEncodeRegTfbsClusteredV3 ZBTB7A score:201, expCount:1, expNums:247, expScores:201, srow:14036
24944 chr1 6480697 6480993 wgEncodeRegTfbsClusteredV3 MAX score:677, expCount:2, expNums:223,576, expScores:677,216, srow:14037
24944 chr1 6480707 6481076 wgEncodeRegTfbsClusteredV3 MAZ score:211, expCount:1, expNums:512, expScores:211, srow:14038
24944 chr1 6480713 6480954 wgEncodeRegTfbsClusteredV3 E2F6 score:493, expCount:1, expNums:215, expScores:493, srow:14039
24944 chr1 6480719 6480978 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:218, expCount:1, expNums:232, expScores:218, srow:14040
24944 chr1 6480836 6481159 wgEncodeRegTfbsClusteredV3 REST score:802, expCount:4, expNums:144,167,226,274, expScores:802,139,638,165, srow:14041
24944 chr1 6480359 6480386 tfbsConsSites V$PAX5_01 score:768, zScore:1.77, srow:10221
24944 chr1 6480745 6480764 tfbsConsSites V$ARNT_02 score:834, zScore:2.63, srow:10222
24944 chr1 6480745 6480764 tfbsConsSites V$MYCMAX_03 score:813, zScore:2.14, srow:10223
24944 chr1 6480748 6480761 tfbsConsSites V$USF_01 score:861, zScore:2.1, srow:10224
24944 chr1 6480749 6480759 tfbsConsSites V$SREBP1_01 score:858, zScore:1.81, srow:10225
24944 chr1 6480808 6480819 tfbsConsSites V$EGR1_01 score:851, zScore:2.05, srow:10226
24944 chr1 6480813 6480832 tfbsConsSites V$MYCMAX_03 score:796, zScore:1.91, srow:10227
24944 chr1 6480816 6480829 tfbsConsSites V$MYCMAX_01 score:800, zScore:1.77, srow:10228
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  • 25 of 53 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24944 cellmeth_recounts PrEC: 76, LNCaP: 767, DU145: 0
24944 cellmeth_diffreps_PrECvsLNCaP A=136, B=683, Length=1140, Event=Up, log2FC=2.33, padj=0
24944 cellmeth_diffreps_PrECvsDU145 A=158, B=0, Length=1000, Event=Down, log2FC=-Inf, padj=0
24944 cellmeth_diffreps_LNCaPvsDU145 A=764.37, B=0, Length=1360, Event=Down, log2FC=-Inf, padj=0
24944 cellexp id=ENSG00000069812, name=HES2, PrEC=9039, str=21515, LNCaP=78, str=123, DU145=62, str=22
24944 tcgameth site:cg00644814, B=0.46, L=0.59, H=0.56
24944 tcgameth site:cg01501312, B=0.42, L=0.6, H=0.57
24944 tcgameth site:cg24864511, B=0.32, L=0.59, H=0.49
24944 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24944 tcgaexp gene=HES2, entrez=54626, pos=chr1:6472498-6484730(-), B=322, L=373, M=321, H=299
24944 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305