DMR 24953 chr1:6681901-6682050 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:6681901-6682050 (View on UCSC) |
| Width | 150bp |
| Genomic Context | exon |
| Nearest Genes | PHF13 (0bp away) |
| ANODEV p-value | 0.000755101800442 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24953 | PHF13 | 159 | uc001aob.4 | chr1 | 6673756 | 6684093 | + | 150 | 100.0 | 0.46 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (100) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24953 | chr1 | 6681870 | 6682273 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:203, expCount:1, expNums:228, expScores:203, srow:15183 |
| 24953 | chr1 | 6681889 | 6681903 | phastConsElements100way | lod=54 | score:388, srow:24315 |
| 24953 | chr1 | 6681906 | 6681908 | phastConsElements100way | lod=17 | score:274, srow:24316 |
| 24953 | chr1 | 6681974 | 6681978 | phastConsElements100way | lod=32 | score:337, srow:24317 |
| 24953 | chr1 | 6682030 | 6682031 | phastConsElements100way | lod=12 | score:240, srow:24318 |
| 24953 | chr1 | 6682037 | 6682040 | phastConsElements100way | lod=18 | score:280, srow:24319 |
| 24953 | chr1 | 6681072 | 6683071 | cpgShelf | — | values(x.gr)[overs$srow, ]:390 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24953 | cellmeth_recounts | PrEC: 17, LNCaP: 18, DU145: 8 |  |
| 24953 | cellmeth_diffreps_PrECvsDU145 | A=177, B=13, Length=500, Event=Down, log2FC=-3.77, padj=0 |  |
| 24953 | cellexp | id=ENSG00000116273, name=PHF13, PrEC=2264, str=2611, LNCaP=1673, str=1572, DU145=1988, str=2081 |  |
| 24953 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24953 | tcgaexp | gene=PHF13, entrez=148479, pos=chr1:6673756-6684093(+), B=1693, L=1505, M=1459, H=1621 |  |
| 24953 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |