DMR Stats | |
---|---|
Position | chr1:7674501-7674700 (View on UCSC) |
Width | 200bp |
Genomic Context | intron |
Nearest Genes | CAMTA1 (0bp away) |
ANODEV p-value | 0.00072857571514 |
Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
24965 | CAMTA1 | 162 | uc001aoi.3 | chr1 | 6845384 | 7829766 | + | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
24965 | chr1 | 7674539 | 7674549 | tfbsConsSites | V$AP1FJ_Q2 | score:931, zScore:2.12, srow:14064 |
24965 | chr1 | 7674558 | 7674566 | tfbsConsSites | V$STAT_01 | score:974, zScore:2.9, srow:14065 |
24965 | chr1 | 7674629 | 7674642 | tfbsConsSites | V$RREB1_01 | score:859, zScore:2.5, srow:14066 |
24965 | chr1 | 7674630 | 7674638 | tfbsConsSites | V$PAX2_02 | score:973, zScore:1.75, srow:14067 |
24965 | chr1 | 7674638 | 7674647 | tfbsConsSites | V$NKX22_01 | score:904, zScore:2.2, srow:14068 |
24965 | chr1 | 7674638 | 7674650 | tfbsConsSites | V$NKX61_01 | score:863, zScore:2.28, srow:14069 |
24965 | chr1 | 7674641 | 7674647 | tfbsConsSites | V$NKX25_01 | score:959, zScore:1.91, srow:14070 |
24965 | chr1 | 7674643 | 7674658 | tfbsConsSites | V$MEF2_01 | score:788, zScore:2.35, srow:14071 |
24965 | chr1 | 7674646 | 7674675 | tfbsConsSites | V$PAX4_04 | score:738, zScore:1.91, srow:14072 |
24965 | chr1 | 7674500 | 7674527 | phastConsElements100way | lod=150 | score:489, srow:27943 |
24965 | chr1 | 7674531 | 7674539 | phastConsElements100way | lod=52 | score:385, srow:27944 |
24965 | chr1 | 7674543 | 7674548 | phastConsElements100way | lod=30 | score:330, srow:27945 |
24965 | chr1 | 7674554 | 7674561 | phastConsElements100way | lod=51 | score:383, srow:27946 |
24965 | chr1 | 7674564 | 7674597 | phastConsElements100way | lod=151 | score:490, srow:27947 |
24965 | chr1 | 7674622 | 7674653 | phastConsElements100way | lod=131 | score:476, srow:27948 |
24965 | chr1 | 7674662 | 7674679 | phastConsElements100way | lod=64 | score:405, srow:27949 |
24965 | chr1 | 7674682 | 7674745 | phastConsElements100way | lod=316 | score:563, srow:27950 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
24965 | cellmeth_recounts | PrEC: 11, LNCaP: 0, DU145: 0 | |
24965 | cellmeth_diffreps_PrECvsLNCaP | A=17, B=0, Length=360, Event=Down, log2FC=-Inf, padj=5.95437566994235e-05 | |
24965 | cellmeth_diffreps_PrECvsDU145 | A=17, B=0, Length=360, Event=Down, log2FC=-Inf, padj=7.41301388411866e-05 | |
24965 | cellexp | id=ENSG00000171735, name=CAMTA1, PrEC=1333, str=672, LNCaP=1796, str=1755, DU145=1524, str=1409 | |
24965 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 | |
24965 | tcgaexp | gene=CAMTA1, entrez=23261, pos=chr1:6845384-7829766(+), B=1373, L=1307, M=1203, H=1168 | |
24965 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |