DMR 24968 chr1:8086851-8087050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:8086851-8087050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | ERRFI1 (457bp away) |
| ANODEV p-value | 0.00127889457406 |
| Frequencies | Benign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24968 | chr1 | 8086906 | 8087055 | wgEncodeRegDnaseClusteredV2 | 3 | score:274, srow:6435 |
| 24968 | chr1 | 8078308 | 8088372 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:66, expNums:11,22,41,61,62,78,104,105,123,124,130,131,146,147,163,168,191,192,206,207,228,229,249,256,259,275,283,306,307,326,328,330,332,334,336,338,340,362,366,402,403,445,446,447,461,465,520,521,522,523,525,563,564,577,583,596,599,610,613,616,619,622,632,633,634,637, expScores:262,276,184,370,679,1000,570,1000,418,413,267,800,815,1000,412,386,306,244,239,272,204,858,141,176,1000,314,166,979,313,564,1000,501,874,590,1000,1000,1000,126,638,278,709,104,248,209,1000,313,215,201,347,233,654,266,175,542,383,393,199,582,182,217,1000,430,351,1000,999,932, srow:17859 |
| 24968 | chr1 | 8086160 | 8087248 | wgEncodeRegTfbsClusteredV3 | REST | score:309, expCount:7, expNums:59,188,189,248,252,258,274, expScores:257,172,309,198,190,192,207, srow:17910 |
| 24968 | chr1 | 8086273 | 8086888 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:391, expCount:4, expNums:345,380,427,479, expScores:261,291,391,356, srow:17941 |
| 24968 | chr1 | 8086335 | 8086950 | wgEncodeRegTfbsClusteredV3 | MYBL2 | score:256, expCount:1, expNums:186, expScores:256, srow:17946 |
| 24968 | chr1 | 8086371 | 8087040 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:263, expCount:1, expNums:8, expScores:263, srow:17950 |
| 24968 | chr1 | 8086423 | 8086920 | wgEncodeRegTfbsClusteredV3 | CTCF | score:216, expCount:5, expNums:595,597,606,635,662, expScores:185,115,122,216,135, srow:17952 |
| 24968 | chr1 | 8086887 | 8087224 | wgEncodeRegTfbsClusteredV3 | GABPA | score:228, expCount:2, expNums:91,180, expScores:174,228, srow:17955 |
| 24968 | chr1 | 8086931 | 8087134 | wgEncodeRegTfbsClusteredV3 | CTCF | score:197, expCount:1, expNums:629, expScores:197, srow:17956 |
| 24968 | chr1 | 8087042 | 8087461 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:378, expCount:1, expNums:199, expScores:378, srow:17957 |
| 24968 | chr1 | 8086991 | 8086993 | phastConsElements100way | lod=14 | score:255, srow:29649 |
| 24968 | chr1 | 8085555 | 8086854 | cpgIsland | CpG: 157 | length:1300, cpgNum:157, gcNum:887, perCpg:24.2, perGc:68.2, obsExp:1.04, srow:362 |
| 24968 | chr1 | 8086855 | 8088854 | cpgShore | — | values(x.gr)[overs$srow, ]:610 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24968 | cellmeth_recounts | PrEC: 10, LNCaP: 45, DU145: 4 |  |
| 24968 | cellmeth_diffreps_LNCaPvsDU145 | A=43.83, B=2.81, Length=420, Event=Down, log2FC=-3.97, padj=1.58409518761844e-08 |  |
| 24968 | cellexp | id=ENSG00000238290, name=RP11-431K24.1, PrEC=2, str=9, LNCaP=4, str=1, DU145=8, str=4 |  |
| 24968 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24968 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |