DMR 24978 chr1:9243101-9243850 (750bp)

DMR Stats
Positionchr1:9243101-9243850 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest Genesmir-34 (649bp away)
ANODEV p-value0.00953546476671
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24978 chr1 9241986 9244315 wgEncodeRegDnaseClusteredV2 106 score:1000, srow:7441
24978 chr1 9241809 9243314 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:33, expNums:61,62,105,124,131,163,168,191,192,206,207,306,308,328,330,332,334,336,338,340,362,402,445,446,465,564,596,602,616,619,632,633,637, expScores:1000,908,779,262,442,567,341,476,645,211,316,266,205,463,181,251,315,477,295,190,171,301,157,321,216,157,348,171,252,107,327,394,124, srow:22796
24978 chr1 9242876 9243255 wgEncodeRegTfbsClusteredV3 CHD2 score:158, expCount:1, expNums:288, expScores:158, srow:22825
24978 chr1 9242885 9243248 wgEncodeRegTfbsClusteredV3 ELF1 score:171, expCount:1, expNums:88, expScores:171, srow:22826
24978 chr1 9242976 9243332 wgEncodeRegTfbsClusteredV3 EBF1 score:212, expCount:2, expNums:86,292, expScores:171,212, srow:22827
24978 chr1 9243008 9243351 wgEncodeRegTfbsClusteredV3 YY1 score:164, expCount:2, expNums:119,128, expScores:160,164, srow:22828
24978 chr1 9243017 9243307 wgEncodeRegTfbsClusteredV3 CTCF score:234, expCount:8, expNums:290,597,604,605,606,607,635,636, expScores:188,193,182,234,127,191,222,179, srow:22829
24978 chr1 9243205 9243232 tfbsConsSites V$PAX5_02 score:778, zScore:1.94, srow:16943
24978 chr1 9243222 9243231 tfbsConsSites V$SP1_01 score:932, zScore:1.79, srow:16944
24978 chr1 9243731 9243738 tfbsConsSites V$E2F_02 score:894, zScore:1.98, srow:16945
24978 chr1 9242168 9243827 cpgIsland CpG: 157 length:1660, cpgNum:157, gcNum:1150, perCpg:18.9, perGc:69.3, obsExp:0.79, srow:380
24978 chr1 9243828 9245827 cpgShore — values(x.gr)[overs$srow, ]:644
  • 12 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24978 cellmeth_recounts PrEC: 137, LNCaP: 42, DU145: 15
24978 cellmeth_diffreps_PrECvsLNCaP A=203, B=22, Length=600, Event=Down, log2FC=-3.21, padj=0
24978 cellmeth_diffreps_PrECvsDU145 A=206, B=12, Length=720, Event=Down, log2FC=-4.1, padj=0
24978 cellexp id=ENSG00000228526, name=RP3-510D11.1, PrEC=3, str=4, LNCaP=4, str=2, DU145=0, str=0
24978 cellexp id=ENSG00000234546, name=RP3-510D11.2, PrEC=92, str=114, LNCaP=162, str=122, DU145=10, str=7
24978 tcgameth site:cg02924110, B=0.1, L=0.29, H=0.28
24978 tcgameth site:cg12385729, B=0.74, L=0.78, H=0.77
24978 tcgameth site:cg24167422, B=0.52, L=0.67, H=0.66
24978 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24978 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305