DMR 24981 chr1:9377851-9378000 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:9377851-9378000 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | SPSB1 (0bp away) |
| ANODEV p-value | 0.000565853625997 |
| Frequencies | Benign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24981 | SPSB1 | 182 | uc010oae.2 | chr1 | 9352941 | 9429590 | + | 150 | 100.0 | 0.37 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24981 | chr1 | 9377721 | 9378435 | wgEncodeRegDnaseClusteredV2 | 89 | score:1000, srow:7580 |
| 24981 | chr1 | 9377608 | 9378007 | wgEncodeRegTfbsClusteredV3 | FOS | score:486, expCount:5, expNums:457,556,557,558,559, expScores:199,486,351,355,430, srow:23433 |
| 24981 | chr1 | 9377646 | 9378055 | wgEncodeRegTfbsClusteredV3 | FOSL2 | score:381, expCount:1, expNums:52, expScores:381, srow:23434 |
| 24981 | chr1 | 9377712 | 9378081 | wgEncodeRegTfbsClusteredV3 | RELA | score:173, expCount:1, expNums:325, expScores:173, srow:23435 |
| 24981 | chr1 | 9377716 | 9377945 | wgEncodeRegTfbsClusteredV3 | FOSL1 | score:184, expCount:1, expNums:219, expScores:184, srow:23436 |
| 24981 | chr1 | 9377874 | 9378337 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:148, expCount:1, expNums:206, expScores:148, srow:23437 |
| 24981 | chr1 | 9377984 | 9378269 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:1000, expCount:5, expNums:565,566,567,568,569, expScores:302,608,619,628,1000, srow:23438 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24981 | cellmeth_recounts | PrEC: 4, LNCaP: 0, DU145: 1 |  |
| 24981 | cellexp | id=ENSG00000171621, name=SPSB1, PrEC=1612, str=4027, LNCaP=293, str=279, DU145=1418, str=1552 |  |
| 24981 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24981 | tcgaexp | gene=SPSB1, entrez=80176, pos=chr1:9352941-9429590(+), B=1546, L=984, M=1109, H=1461 |  |
| 24981 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |