DMR 24982 chr1:9381501-9381700 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:9381501-9381700 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | SPSB1 (0bp away) |
| ANODEV p-value | 0.0114553573679 |
| Frequencies | Benign: 2.0 (28.57%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24982 | SPSB1 | 182 | uc010oae.2 | chr1 | 9352941 | 9429590 | + | 200 | 100.0 | 0.62 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24982 | chr1 | 9381506 | 9381890 | wgEncodeRegDnaseClusteredV2 | 59 | score:1000, srow:7586 |
| 24982 | chr1 | 9381327 | 9381850 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:251, expCount:1, expNums:275, expScores:251, srow:23446 |
| 24982 | chr1 | 9381420 | 9381750 | wgEncodeRegTfbsClusteredV3 | STAT3 | score:498, expCount:4, expNums:566,567,568,569, expScores:340,373,373,498, srow:23447 |
| 24982 | chr1 | 9381472 | 9381881 | wgEncodeRegTfbsClusteredV3 | FOSL2 | score:257, expCount:1, expNums:52, expScores:257, srow:23448 |
| 24982 | chr1 | 9381538 | 9381701 | wgEncodeRegTfbsClusteredV3 | FOS | score:601, expCount:4, expNums:556,557,558,559, expScores:589,586,541,601, srow:23449 |
| 24982 | chr1 | 9381575 | 9381737 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:904, expCount:1, expNums:462, expScores:904, srow:23450 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24982 | cellmeth_recounts | PrEC: 1, LNCaP: 3, DU145: 0 |  |
| 24982 | cellexp | id=ENSG00000171621, name=SPSB1, PrEC=1612, str=4027, LNCaP=293, str=279, DU145=1418, str=1552 |  |
| 24982 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24982 | tcgaexp | gene=SPSB1, entrez=80176, pos=chr1:9352941-9429590(+), B=1546, L=984, M=1109, H=1461 |  |
| 24982 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |