DMR 24984 chr1:9654001-9654150 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:9654001-9654150 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | TMEM201 (0bp away) |
| ANODEV p-value | 1.81664319822e-05 |
| Frequencies | Benign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24984 | TMEM201 | 185 | uc001apy.3 | chr1 | 9648932 | 9665020 | + | 150 | 100.0 | 0.37 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 24984 | TMEM201 | 185 | uc021ofy.1 | chr1 | 9648932 | 9674935 | + | 150 | 100.0 | 0.62 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24984 | chr1 | 9653541 | 9654195 | wgEncodeRegDnaseClusteredV2 | 116 | score:1000, srow:7855 |
| 24984 | chr1 | 9653500 | 9654047 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:266, expCount:2, expNums:312,357, expScores:186,266, srow:24397 |
| 24984 | chr1 | 9653925 | 9654281 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:15, expNums:5,14,35,39,137,609,635,645,657,664,671,676,683,686,688, expScores:220,469,85,1000,430,183,1000,237,146,1000,1000,959,1000,1000,642, srow:24405 |
| 24984 | chr1 | 9653970 | 9654095 | wgEncodeRegTfbsClusteredV3 | MYC | score:309, expCount:1, expNums:560, expScores:309, srow:24406 |
| 24984 | chr1 | 9653974 | 9654217 | wgEncodeRegTfbsClusteredV3 | REST | score:114, expCount:1, expNums:144, expScores:114, srow:24407 |
| 24984 | chr1 | 9653987 | 9654226 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:176, expCount:1, expNums:149, expScores:176, srow:24408 |
| 24984 | chr1 | 9653994 | 9654009 | tfbsConsSites | V$FREAC3_01 | score:832, zScore:2.28, srow:17887 |
| 24984 | chr1 | 9654003 | 9654015 | tfbsConsSites | V$IK3_01 | score:879, zScore:2.24, srow:17888 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24984 | cellmeth_recounts | PrEC: 0, LNCaP: 73, DU145: 0 |  |
| 24984 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=72, Length=600, Event=Up, log2FC=Inf, padj=0 |  |
| 24984 | cellmeth_diffreps_LNCaPvsDU145 | A=76.97, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0 |  |
| 24984 | cellexp | id=ENSG00000188807, name=TMEM201, PrEC=2178, str=899, LNCaP=2394, str=2564, DU145=1313, str=1765 |  |
| 24984 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24984 | tcgaexp | gene=TMEM201, entrez=199953, pos=chr1:9648932-9674935(+), B=805, L=1006, M=956, H=1041 |  |
| 24984 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |