DMR 24987 chr1:9750001-9750150 (150bp)

DMR Stats
Positionchr1:9750001-9750150 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesPIK3CD (0bp away)
ANODEV p-value0.00449696746084
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
24987 PIK3CD 186 uc001aqa.2 chr1 9711790 9775827 + 150 100.0 0.78 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
24987 PIK3CD 186 uc001aqb.4 chr1 9711790 9789172 + 150 100.0 0.78 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
24987 chr1 9749986 9750490 wgEncodeRegDnaseClusteredV2 57 score:499, srow:7959
24987 chr1 9749858 9750367 wgEncodeRegTfbsClusteredV3 SAP30 score:111, expCount:1, expNums:34, expScores:111, srow:24902
24987 chr1 9749860 9750379 wgEncodeRegTfbsClusteredV3 SIN3A score:195, expCount:1, expNums:357, expScores:195, srow:24903
24987 chr1 9749919 9750790 wgEncodeRegTfbsClusteredV3 RBBP5 score:331, expCount:1, expNums:8, expScores:203, srow:24904
24987 chr1 9749956 9750311 wgEncodeRegTfbsClusteredV3 MAX score:715, expCount:2, expNums:223,511, expScores:715,257, srow:24905
24987 chr1 9749979 9750291 wgEncodeRegTfbsClusteredV3 FOXA1 score:269, expCount:2, expNums:177,178, expScores:269,235, srow:24906
24987 chr1 9750008 9750200 wgEncodeRegTfbsClusteredV3 E2F6 score:405, expCount:2, expNums:215,495, expScores:405,358, srow:24907
24987 chr1 9750028 9750331 wgEncodeRegTfbsClusteredV3 FOXP2 score:146, expCount:1, expNums:251, expScores:146, srow:24908
24987 chr1 9750095 9750546 wgEncodeRegTfbsClusteredV3 CTCF score:424, expCount:37, expNums:16,37,39,44,48,49,267,463,493,595,597,621,635,636,639,640,641,642,643,644,646,647,659,660,661,662,664,671,672,673,674,675,682,683,684,685,686, expScores:108,114,157,177,167,190,119,212,191,424,254,165,168,192,236,262,150,223,276,109,306,110,290,107,166,203,146,252,166,244,239,127,206,130,84,238,197, srow:24909
24987 chr1 9750094 9750100 tfbsConsSites V$AP2REP_01 score:979, zScore:2.01, srow:18071
24987 chr1 9750021 9750029 phastConsElements100way lod=20 score:290, srow:35062
24987 chr1 9750077 9750079 phastConsElements100way lod=15 score:262, srow:35063
24987 chr1 9750088 9750091 phastConsElements100way lod=13 score:247, srow:35064
24987 chr1 9750098 9750102 phastConsElements100way lod=14 score:255, srow:35065
24987 chr1 9750111 9750117 phastConsElements100way lod=18 score:280, srow:35066
24987 chr1 9750132 9750143 phastConsElements100way lod=48 score:377, srow:35067
24987 chr1 9749296 9750228 cpgIsland CpG: 71 length:933, cpgNum:71, gcNum:507, perCpg:15.2, perGc:54.3, obsExp:1.03, srow:394
  • 17 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
24987 cellmeth_recounts PrEC: 0, LNCaP: 382, DU145: 0
24987 cellmeth_diffreps_PrECvsLNCaP A=0, B=348, Length=640, Event=Up, log2FC=Inf, padj=0
24987 cellmeth_diffreps_LNCaPvsDU145 A=489.62, B=0, Length=1100, Event=Down, log2FC=-Inf, padj=0
24987 cellexp id=ENSG00000171608, name=PIK3CD, PrEC=3834, str=3787, LNCaP=5830, str=5059, DU145=960, str=444
24987 tcgameth site:cg23251761, B=0.32, L=0.71, H=0.66
24987 tcgaexp gene=PIK3CD, entrez=5293, pos=chr1:9711790-9789172(+), B=655, L=521, M=502, H=510
24987 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
24987 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305