DMR 24995 chr1:10591551-10591700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:10591551-10591700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | PEX14 (0bp away) |
| ANODEV p-value | 0.0358917771048 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24995 | PEX14 | 199 | uc001arm.1 | chr1 | 10535003 | 10638484 | + | 150 | 100.0 | 0.03 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) | 0.0 |
| 24995 | PEX14 | 199 | uc001arn.3 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 24995 | PEX14 | 199 | uc009vmu.1 | chr1 | 10535003 | 10683924 | + | 150 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 24995 | PEX14 | 199 | uc009vmv.3 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 24995 | PEX14 | 199 | uc009vmw.3 | chr1 | 10588312 | 10690815 | + | 150 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 24995 | PEX14 | 199 | uc010oam.2 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
| 24995 | PEX14 | 199 | uc010oan.2 | chr1 | 10535003 | 10690815 | + | 150 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 24995 | chr1 | 10591652 | 10591675 | tfbsConsSites | V$BRACH_01 | score:720, zScore:2.52, srow:20065 |
| 24995 | chr1 | 10591553 | 10591579 | phastConsElements100way | lod=144 | score:485, srow:39156 |
| 24995 | chr1 | 10591583 | 10591586 | phastConsElements100way | lod=27 | score:320, srow:39157 |
| 24995 | chr1 | 10591616 | 10591620 | phastConsElements100way | lod=19 | score:285, srow:39158 |
| 24995 | chr1 | 10591643 | 10591704 | phastConsElements100way | lod=128 | score:474, srow:39159 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 24995 | cellmeth_recounts | PrEC: 3, LNCaP: 1, DU145: 0 |  |
| 24995 | cellexp | id=ENSG00000142655, name=PEX14, PrEC=2040, str=2504, LNCaP=1455, str=1052, DU145=1343, str=1366 |  |
| 24995 | tcgaexp | gene=PEX14, entrez=5195, pos=chr1:10535003-10690815(+), B=2169, L=1677, M=1496, H=1299 |  |
| 24995 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 24995 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |