DMR 25001 chr1:11036301-11036500 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:11036301-11036500 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | C1orf127 (0bp away) |
| ANODEV p-value | 0.00707682691388 |
| Frequencies | Benign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25001 | C1orf127 | 202 | uc010oao.2 | chr1 | 11006530 | 11042094 | - | 200 | 100.0 | 0.05 | 0 | 0.0 | E1 (0), I1 (94), E2 (6.5), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25001 | chr1 | 11036161 | 11036395 | wgEncodeRegDnaseClusteredV2 | 17 | score:658, srow:9016 |
| 25001 | chr1 | 11035812 | 11036331 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:195, expCount:1, expNums:357, expScores:195, srow:28205 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25001 | cellmeth_recounts | PrEC: 7, LNCaP: 18, DU145: 26 |  |
| 25001 | cellexp | id=ENSG00000175262, name=C1orf127, PrEC=2, str=0, LNCaP=4, str=3, DU145=3, str=0 |  |
| 25001 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25001 | tcgaexp | gene=C1orf127, entrez=148345, pos=chr1:11006530-11042094(-), B=8, L=5, M=8, H=10 |  |
| 25001 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |