DMR 25005 chr1:11714151-11714550 (400bp)
| DMR Stats | |
|---|---|
| Position | chr1:11714151-11714550 (View on UCSC) |
| Width | 400bp |
| Genomic Context | promoter |
| Nearest Genes | FBXO2, FBXO44 (0bp away) |
| ANODEV p-value | 0.000507642861362 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25005 | FBXO2 | 212 | uc001asj.3 | chr1 | 11708418 | 11714888 | - | 400 | 100.0 | 0.05 | 0 | 40.5 | E1 (43.75), I1 (56.25), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 25005 | FBXO44 | 213 | uc001ask.3 | chr1 | 11714432 | 11723384 | + | 119 | 29.75 | 0.05 | 0 | 100.0 | E1 (29.75), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 25005 | FBXO2 | 212 | uc009vna.3 | chr1 | 11708418 | 11714888 | - | 400 | 100.0 | 0.06 | 0 | 40.5 | E1 (43.75), I1 (56.25), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 25005 | FBXO2 | 212 | uc009vnb.1 | chr1 | 11709144 | 11714401 | - | 251 | 62.75 | 0.87 | 1 | 100.0 | E1 (62.75), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25005 | chr1 | 11713086 | 11714295 | wgEncodeRegDnaseClusteredV2 | 69 | score:1000, srow:9595 |
| 25005 | chr1 | 11714346 | 11715615 | wgEncodeRegDnaseClusteredV2 | 77 | score:1000, srow:9596 |
| 25005 | chr1 | 11714126 | 11714761 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:6, expNums:163,192,445,446,610,616, expScores:659,1000,274,220,125,251, srow:29547 |
| 25005 | chr1 | 11714254 | 11714709 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:140, expCount:1, expNums:195, expScores:140, srow:29548 |
| 25005 | chr1 | 11714287 | 11714662 | wgEncodeRegTfbsClusteredV3 | TBP | score:140, expCount:1, expNums:359, expScores:140, srow:29549 |
| 25005 | chr1 | 11714303 | 11714626 | wgEncodeRegTfbsClusteredV3 | REST | score:461, expCount:2, expNums:188,248, expScores:461,168, srow:29550 |
| 25005 | chr1 | 11714334 | 11714958 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:681, expCount:1, expNums:199, expScores:204, srow:29551 |
| 25005 | chr1 | 11714378 | 11715047 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:229, expCount:1, expNums:8, expScores:229, srow:29552 |
| 25005 | chr1 | 11714484 | 11714839 | wgEncodeRegTfbsClusteredV3 | TAF7 | score:177, expCount:1, expNums:158, expScores:177, srow:29553 |
| 25005 | chr1 | 11714520 | 11715019 | wgEncodeRegTfbsClusteredV3 | MAZ | score:191, expCount:2, expNums:440,512, expScores:158,191, srow:29554 |
| 25005 | chr1 | 11714253 | 11714260 | tfbsConsSites | V$E2F_02 | score:957, zScore:2.99, srow:25903 |
| 25005 | chr1 | 11714391 | 11714400 | tfbsConsSites | V$CDPCR3HD_01 | score:906, zScore:2.09, srow:25904 |
| 25005 | chr1 | 11714503 | 11714517 | tfbsConsSites | V$TATA_01 | score:887, zScore:2.11, srow:25905 |
| 25005 | chr1 | 11714541 | 11714555 | tfbsConsSites | V$HNF4_01_B | score:808, zScore:1.66, srow:25906 |
| 25005 | chr1 | 11714541 | 11714556 | tfbsConsSites | V$ARP1_01 | score:796, zScore:1.81, srow:25907 |
| 25005 | chr1 | 11714258 | 11714265 | phastConsElements100way | lod=24 | score:308, srow:45715 |
| 25005 | chr1 | 11714371 | 11714407 | phastConsElements100way | lod=153 | score:491, srow:45716 |
| 25005 | chr1 | 11714422 | 11714445 | phastConsElements100way | lod=34 | score:343, srow:45717 |
| 25005 | chr1 | 11714449 | 11714456 | phastConsElements100way | lod=13 | score:247, srow:45718 |
| 25005 | chr1 | 11714462 | 11714468 | phastConsElements100way | lod=19 | score:285, srow:45719 |
| 25005 | chr1 | 11714507 | 11714518 | phastConsElements100way | lod=54 | score:388, srow:45720 |
| 25005 | chr1 | 11714535 | 11714552 | phastConsElements100way | lod=27 | score:320, srow:45721 |
| 25005 | chr1 | 11714218 | 11715304 | cpgIsland | CpG: 100 | length:1087, cpgNum:100, gcNum:666, perCpg:18.4, perGc:61.3, obsExp:0.99, srow:436 |
| 25005 | chr1 | 11710789 | 11714217 | cpgShore | — | values(x.gr)[overs$srow, ]:744 |
- 24 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25005 | cellmeth_recounts | PrEC: 44, LNCaP: 799, DU145: 0 |  |
| 25005 | cellmeth_diffreps_PrECvsLNCaP | A=76, B=680, Length=920, Event=Up, log2FC=3.16, padj=0 |  |
| 25005 | cellmeth_diffreps_PrECvsDU145 | A=71, B=0, Length=600, Event=Down, log2FC=-Inf, padj=0 |  |
| 25005 | cellmeth_diffreps_LNCaPvsDU145 | A=728.02, B=0, Length=980, Event=Down, log2FC=-Inf, padj=0 |  |
| 25005 | cellexp | id=ENSG00000116661, name=FBXO2, PrEC=1697, str=4448, LNCaP=956, str=451, DU145=1043, str=689 |  |
| 25005 | cellexp | id=ENSG00000132879, name=FBXO44, PrEC=1240, str=2584, LNCaP=2687, str=983, DU145=526, str=357 |  |
| 25005 | tcgameth | site:cg00953777, B=0.04, L=0.03, H=0.03 |  |
| 25005 | tcgameth | site:cg01420388, B=0.38, L=0.53, H=0.51 |  |
| 25005 | tcgameth | site:cg05796704, B=0.46, L=0.71, H=0.67 |  |
| 25005 | tcgameth | site:cg07426195, B=0.02, L=0.01, H=0.02 |  |
| 25005 | tcgameth | site:cg22697136, B=0.46, L=0.64, H=0.6 |  |
| 25005 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25005 | tcgaexp | gene=FBXO2, entrez=26232, pos=chr1:11708418-11714888(-), B=828, L=512, M=475, H=349 |  |
| 25005 | tcgaexp | gene=FBXO44, entrez=93611, pos=chr1:11714432-11723384(+), B=1517, L=1525, M=1406, H=1366 |  |
| 25005 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |