DMR 25013 chr1:12256751-12256950 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:12256751-12256950 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | TNFRSF1B (0bp away) |
| ANODEV p-value | 0.00109401607525 |
| Frequencies | Benign: 1.0 (14.29%), Low: 6.0 (100.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25013 | TNFRSF1B | 230 | uc001att.3 | chr1 | 12227060 | 12269277 | + | 200 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0) | 0.0 |
| 25013 | TNFRSF1B | 230 | uc001atu.3 | chr1 | 12227060 | 12269277 | + | 200 | 100.0 | 0.11 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0) | 0.0 |
| 25013 | TNFRSF1B | 230 | uc009vnk.3 | chr1 | 12227060 | 12269277 | + | 200 | 100.0 | 0.07 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25013 | chr1 | 12256466 | 12257110 | wgEncodeRegDnaseClusteredV2 | 54 | score:1000, srow:10146 |
| 25013 | chr1 | 12256599 | 12257118 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:364, expCount:1, expNums:357, expScores:364, srow:33029 |
| 25013 | chr1 | 12256658 | 12257265 | wgEncodeRegTfbsClusteredV3 | CTCF | score:842, expCount:41, expNums:5,12,16,24,137,174,213,290,493,595,597,601,603,604,605,607,609,612,621,628,629,630,635,645,654,655,656,659,661,662,663,664,667,669,671,678,679,681,685,687,688, expScores:574,230,115,224,571,420,146,470,194,164,171,183,842,539,513,165,106,244,145,205,595,368,241,466,489,191,114,170,156,226,139,224,447,173,212,135,173,275,202,180,628, srow:33030 |
| 25013 | chr1 | 12256710 | 12257013 | wgEncodeRegTfbsClusteredV3 | TCF3 | score:139, expCount:1, expNums:117, expScores:139, srow:33031 |
| 25013 | chr1 | 12256719 | 12257042 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:126, expCount:1, expNums:151, expScores:126, srow:33032 |
| 25013 | chr1 | 12256729 | 12257166 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:733, expCount:6, expNums:149,193,231,264,355,448, expScores:733,285,153,193,314,148, srow:33033 |
| 25013 | chr1 | 12256740 | 12256999 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:255, expCount:1, expNums:116, expScores:255, srow:33034 |
| 25013 | chr1 | 12256745 | 12257060 | wgEncodeRegTfbsClusteredV3 | MYC | score:193, expCount:1, expNums:575, expScores:193, srow:33035 |
| 25013 | chr1 | 12256757 | 12257032 | wgEncodeRegTfbsClusteredV3 | MAX | score:297, expCount:1, expNums:576, expScores:297, srow:33036 |
| 25013 | chr1 | 12256784 | 12257007 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:144, expCount:1, expNums:425, expScores:144, srow:33037 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25013 | cellmeth_recounts | PrEC: 11, LNCaP: 3, DU145: 3 |  |
| 25013 | cellmeth_diffreps_PrECvsDU145 | A=17, B=1, Length=320, Event=Down, log2FC=-4.09, padj=0.00138789698671783 |  |
| 25013 | cellexp | id=ENSG00000028137, name=TNFRSF1B, PrEC=3, str=2, LNCaP=18, str=18, DU145=319, str=253 |  |
| 25013 | tcgaexp | gene=TNFRSF1B, entrez=7133, pos=chr1:12227060-12269277(+), B=1322, L=1326, M=1227, H=1348 |  |
| 25013 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25013 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |