DMR 25020 chr1:13839451-13839650 (200bp)

DMR Stats
Positionchr1:13839451-13839650 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesLRRC38 (0bp away)
ANODEV p-value0.00098928673558
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25020 LRRC38 263 uc001avb.3 chr1 13801445 13840242 - 200 100.0 0.07 0 0.0 E1 (96.5), I1 (3.5), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25020 chr1 13839526 13840175 wgEncodeRegDnaseClusteredV2 19 score:351, srow:10638
25020 chr1 13838745 13840221 wgEncodeRegTfbsClusteredV3 EZH2 score:387, expCount:2, expNums:6,19, expScores:294,97, srow:35254
25020 chr1 13839442 13840561 wgEncodeRegTfbsClusteredV3 SUZ12 score:202, expCount:1, expNums:578, expScores:127, srow:35255
25020 chr1 13839493 13840012 wgEncodeRegTfbsClusteredV3 SIN3A score:197, expCount:1, expNums:357, expScores:197, srow:35256
25020 chr1 13839609 13840278 wgEncodeRegTfbsClusteredV3 RBBP5 score:244, expCount:1, expNums:8, expScores:244, srow:35257
25020 chr1 13839501 13839524 tfbsConsSites V$GFI1_01 score:786, zScore:1.65, srow:28938
25020 chr1 13839521 13839534 tfbsConsSites V$ROAZ_01 score:741, zScore:1.67, srow:28939
25020 chr1 13839527 13839541 tfbsConsSites V$TAXCREB_01 score:776, zScore:1.69, srow:28940
25020 chr1 13839528 13839537 tfbsConsSites V$NFKAPPAB50_01 score:857, zScore:1.68, srow:28941
25020 chr1 13839616 13839631 tfbsConsSites V$E47_02 score:901, zScore:2.09, srow:28942
25020 chr1 13839618 13839629 tfbsConsSites V$LMO2COM_01 score:927, zScore:1.82, srow:28943
25020 chr1 13839476 13839476 cosmic COSM1600687 srow:8225
25020 chr1 13839490 13839490 cosmic COSM1333431 srow:8226
25020 chr1 13839545 13839545 cosmic COSM1333432 srow:8227
25020 chr1 13839553 13839553 cosmic COSM1333433 srow:8228
25020 chr1 13839452 13839464 phastConsElements100way lod=105 score:454, srow:51514
25020 chr1 13839466 13839473 phastConsElements100way lod=75 score:421, srow:51515
25020 chr1 13839477 13839521 phastConsElements100way lod=348 score:573, srow:51516
25020 chr1 13839523 13839527 phastConsElements100way lod=46 score:373, srow:51517
25020 chr1 13839529 13839539 phastConsElements100way lod=138 score:481, srow:51518
25020 chr1 13839541 13839547 phastConsElements100way lod=60 score:399, srow:51519
25020 chr1 13839550 13839560 phastConsElements100way lod=73 score:418, srow:51520
25020 chr1 13839562 13839566 phastConsElements100way lod=57 score:394, srow:51521
25020 chr1 13839574 13839577 phastConsElements100way lod=27 score:320, srow:51522
25020 chr1 13839580 13839584 phastConsElements100way lod=45 score:370, srow:51523
  • Page 1 of 2
  • 25 of 30 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25020 cellmeth_recounts PrEC: 1, LNCaP: 11, DU145: 1
25020 cellexp id=ENSG00000162494, name=LRRC38, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
25020 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25020 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305