DMR 25022 chr1:14057451-14057650 (200bp)

DMR Stats
Positionchr1:14057451-14057650 (View on UCSC)
Width200bp
Genomic Contextexon
Nearest GenesPRDM2 (0bp away)
ANODEV p-value2.87697924346e-05
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25022 PRDM2 265 uc001avg.3 chr1 14026735 14151574 + 200 100.0 0.11 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25022 PRDM2 265 uc001avh.3 chr1 14031350 14114574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
25022 PRDM2 265 uc001avi.3 chr1 14031350 14151574 + 200 100.0 0.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (22), E3 (59), I3 (19.5), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25022 chr1 14057226 14057775 wgEncodeRegDnaseClusteredV2 57 score:1000, srow:10805
25022 chr1 14057046 14058070 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:18, expNums:104,105,123,124,130,131,306,307,326,328,330,332,334,336,338,340,585,602, expScores:1000,1000,273,625,435,763,1000,249,1000,757,622,938,299,878,527,820,1000,399, srow:35539
25022 chr1 14057101 14057830 wgEncodeRegTfbsClusteredV3 FOXM1 score:297, expCount:1, expNums:90, expScores:243, srow:35540
25022 chr1 14057115 14057733 wgEncodeRegTfbsClusteredV3 YY1 score:249, expCount:3, expNums:119,128,133, expScores:249,189,165, srow:35541
25022 chr1 14057154 14057553 wgEncodeRegTfbsClusteredV3 WRNIP1 score:124, expCount:1, expNums:320, expScores:124, srow:35542
25022 chr1 14057165 14057661 wgEncodeRegTfbsClusteredV3 RUNX3 score:1000, expCount:1, expNums:109, expScores:310, srow:35543
25022 chr1 14057170 14057579 wgEncodeRegTfbsClusteredV3 STAT3 score:166, expCount:1, expNums:315, expScores:166, srow:35544
25022 chr1 14057181 14057538 wgEncodeRegTfbsClusteredV3 ATF2 score:847, expCount:1, expNums:79, expScores:847, srow:35545
25022 chr1 14057182 14057865 wgEncodeRegTfbsClusteredV3 PML score:425, expCount:1, expNums:103, expScores:425, srow:35546
25022 chr1 14057192 14057630 wgEncodeRegTfbsClusteredV3 PAX5 score:512, expCount:4, expNums:100,101,122,129, expScores:512,231,188,167, srow:35547
25022 chr1 14057195 14057665 wgEncodeRegTfbsClusteredV3 EP300 score:502, expCount:3, expNums:99,304,305, expScores:174,502,269, srow:35548
25022 chr1 14057195 14057905 wgEncodeRegTfbsClusteredV3 NFIC score:727, expCount:1, expNums:97, expScores:412, srow:35549
25022 chr1 14057197 14057788 wgEncodeRegTfbsClusteredV3 TBP score:313, expCount:1, expNums:317, expScores:271, srow:35550
25022 chr1 14057237 14057789 wgEncodeRegTfbsClusteredV3 RELA score:432, expCount:6, expNums:300,325,329,335,337,339, expScores:263,387,432,300,357,227, srow:35551
25022 chr1 14057237 14057836 wgEncodeRegTfbsClusteredV3 MYC score:111, expCount:1, expNums:600, expScores:111, srow:35552
25022 chr1 14057238 14057507 wgEncodeRegTfbsClusteredV3 SMC3 score:172, expCount:1, expNums:313, expScores:172, srow:35553
25022 chr1 14057252 14057787 wgEncodeRegTfbsClusteredV3 SIN3A score:345, expCount:1, expNums:312, expScores:345, srow:35554
25022 chr1 14057254 14057489 wgEncodeRegTfbsClusteredV3 BATF score:201, expCount:1, expNums:81, expScores:201, srow:35555
25022 chr1 14057265 14057924 wgEncodeRegTfbsClusteredV3 MTA3 score:438, expCount:1, expNums:95, expScores:438, srow:35556
25022 chr1 14057271 14057566 wgEncodeRegTfbsClusteredV3 MEF2C score:191, expCount:1, expNums:94, expScores:191, srow:35557
25022 chr1 14057295 14057674 wgEncodeRegTfbsClusteredV3 CHD2 score:206, expCount:1, expNums:288, expScores:206, srow:35558
25022 chr1 14057304 14057583 wgEncodeRegTfbsClusteredV3 BCL11A score:138, expCount:1, expNums:82, expScores:138, srow:35559
25022 chr1 14057311 14057720 wgEncodeRegTfbsClusteredV3 TBL1XR1 score:272, expCount:1, expNums:316, expScores:272, srow:35560
25022 chr1 14057316 14057680 wgEncodeRegTfbsClusteredV3 POU2F2 score:740, expCount:2, expNums:106,125, expScores:740,279, srow:35561
25022 chr1 14057327 14057720 wgEncodeRegTfbsClusteredV3 CTCF score:265, expCount:13, expNums:0,2,290,603,604,605,606,607,650,651,652,653,655, expScores:133,161,265,114,179,150,122,120,217,170,245,217,99, srow:35562
  • Page 1 of 3
  • 25 of 60 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25022 cellmeth_recounts PrEC: 3, LNCaP: 1, DU145: 0
25022 cellexp id=ENSG00000116731, name=PRDM2, PrEC=3050, str=4239, LNCaP=2463, str=2583, DU145=2002, str=2354
25022 tcgameth site:cg06604289, B=0.36, L=0.66, H=0.61
25022 tcgaexp gene=PRDM2, entrez=7799, pos=chr1:14026735-14151574(+), B=3734, L=3334, M=3193, H=3190
25022 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25022 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305