DMR 25024 chr1:14140251-14140450 (200bp)

DMR Stats
Positionchr1:14140251-14140450 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesPRDM2 (0bp away)
ANODEV p-value0.00160792025279
FrequenciesBenign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25024 PRDM2 265 uc001avg.3 chr1 14026735 14151574 + 200 100.0 0.39 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0) 0.0
25024 PRDM2 265 uc001avi.3 chr1 14031350 14151574 + 200 100.0 0.31 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0) 0.0
25024 PRDM2 265 uc009voe.3 chr1 14075856 14151574 + 200 100.0 0.13 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
25024 PRDM2 265 uc009vof.3 chr1 14075856 14151574 + 200 100.0 0.13 1 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25024 chr1 14140181 14140430 wgEncodeRegDnaseClusteredV2 68 score:777, srow:10893
25024 chr1 14139848 14140287 wgEncodeRegTfbsClusteredV3 CBX3 score:368, expCount:1, expNums:211, expScores:368, srow:35806
25024 chr1 14139985 14140280 wgEncodeRegTfbsClusteredV3 RCOR1 score:342, expCount:1, expNums:492, expScores:342, srow:35807
25024 chr1 14140097 14140432 wgEncodeRegTfbsClusteredV3 YY1 score:256, expCount:1, expNums:162, expScores:256, srow:35808
25024 chr1 14140110 14140508 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:93, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,137,174,213,262,290,463,493,595,597,598,601,603,604,605,606,607,609,612,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,648,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:410,1000,983,577,341,194,660,334,550,1000,202,797,328,464,999,94,91,1000,330,1000,160,933,690,1000,820,1000,455,1000,887,1000,1000,572,1000,780,737,253,1000,553,510,306,837,731,566,747,380,1000,776,458,1000,804,719,124,1000,863,1000,1000,1000,1000,758,759,601,755,803,1000,570,1000,1000,1000,496,665,694,649,475,1000,536,919,1000,1000,509,1000,638,1000,1000,200,183,753,389,340,524,482,174,496,555, srow:35809
25024 chr1 14140114 14140483 wgEncodeRegTfbsClusteredV3 MAZ score:256, expCount:1, expNums:512, expScores:256, srow:35810
25024 chr1 14140130 14140440 wgEncodeRegTfbsClusteredV3 ZNF143 score:376, expCount:2, expNums:361,552, expScores:376,338, srow:35811
25024 chr1 14140139 14140474 wgEncodeRegTfbsClusteredV3 POLR2A score:151, expCount:1, expNums:256, expScores:151, srow:35812
25024 chr1 14140151 14140460 wgEncodeRegTfbsClusteredV3 PAX5 score:393, expCount:3, expNums:100,101,129, expScores:393,185,178, srow:35813
25024 chr1 14140160 14140443 wgEncodeRegTfbsClusteredV3 SMC3 score:391, expCount:3, expNums:313,408,535, expScores:342,209,391, srow:35814
25024 chr1 14140183 14140426 wgEncodeRegTfbsClusteredV3 RAD21 score:1000, expCount:6, expNums:108,149,231,355,466,529, expScores:520,1000,564,612,486,97, srow:35815
25024 chr1 14140216 14140385 wgEncodeRegTfbsClusteredV3 CTCFL score:229, expCount:1, expNums:214, expScores:229, srow:35816
25024 chr1 14140248 14140389 wgEncodeRegTfbsClusteredV3 ELF1 score:479, expCount:2, expNums:88,217, expScores:294,479, srow:35817
25024 chr1 14139796 14140797 oreganno OREG0013113 id:OREG0013113, srow:203
25024 chr1 14140293 14140313 oreganno OREG0007951 id:OREG0007951, srow:204
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25024 cellmeth_recounts PrEC: 9, LNCaP: 9, DU145: 0
25024 cellmeth_diffreps_PrECvsDU145 A=13, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000941091010072773
25024 cellexp id=ENSG00000116731, name=PRDM2, PrEC=3050, str=4239, LNCaP=2463, str=2583, DU145=2002, str=2354
25024 tcgaexp gene=PRDM2, entrez=7799, pos=chr1:14026735-14151574(+), B=3734, L=3334, M=3193, H=3190
25024 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25024 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305