DMR 25047 chr1:16482651-16482900 (250bp)

DMR Stats
Positionchr1:16482651-16482900 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesEPHA2 (68bp away)
ANODEV p-value0.00166347572635
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25047 chr1 16481961 16482950 wgEncodeRegDnaseClusteredV2 112 score:1000, srow:12679
25047 chr1 16481096 16483025 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:37, expNums:11,22,61,62,78,146,147,163,168,191,192,206,207,249,259,275,362,366,402,403,445,446,447,461,465,563,564,596,599,610,613,616,619,632,633,634,637, expScores:214,204,1000,1000,230,860,1000,1000,956,241,1000,246,1000,212,995,731,445,197,651,574,929,886,289,564,621,622,199,1000,845,274,177,889,1000,382,1000,422,553, srow:42379
25047 chr1 16482157 16482687 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:295, expCount:4, expNums:195,250,253,260, expScores:295,152,124,185, srow:42400
25047 chr1 16482177 16482846 wgEncodeRegTfbsClusteredV3 RBBP5 score:284, expCount:1, expNums:8, expScores:284, srow:42401
25047 chr1 16482292 16482871 wgEncodeRegTfbsClusteredV3 ATF2 score:350, expCount:1, expNums:134, expScores:350, srow:42402
25047 chr1 16482295 16482830 wgEncodeRegTfbsClusteredV3 YY1 score:350, expCount:5, expNums:70,162,164,203,266, expScores:339,255,254,350,212, srow:42403
25047 chr1 16482304 16482807 wgEncodeRegTfbsClusteredV3 REST score:253, expCount:4, expNums:59,189,252,258, expScores:253,197,204,195, srow:42404
25047 chr1 16482325 16482780 wgEncodeRegTfbsClusteredV3 TAF1 score:929, expCount:6, expNums:65,157,169,199,254,261, expScores:172,929,508,861,323,587, srow:42405
25047 chr1 16482341 16482956 wgEncodeRegTfbsClusteredV3 MYBL2 score:278, expCount:1, expNums:186, expScores:278, srow:42406
25047 chr1 16482342 16482812 wgEncodeRegTfbsClusteredV3 MXI1 score:204, expCount:2, expNums:397,441, expScores:164,204, srow:42407
25047 chr1 16482343 16482698 wgEncodeRegTfbsClusteredV3 TAF7 score:326, expCount:1, expNums:158, expScores:326, srow:42408
25047 chr1 16482350 16482945 wgEncodeRegTfbsClusteredV3 TCF7L2 score:638, expCount:3, expNums:363,414,581, expScores:380,638,519, srow:42409
25047 chr1 16482378 16482777 wgEncodeRegTfbsClusteredV3 FOS score:168, expCount:3, expNums:457,556,557, expScores:168,157,160, srow:42410
25047 chr1 16482379 16482754 wgEncodeRegTfbsClusteredV3 TBP score:757, expCount:3, expNums:359,412,452, expScores:687,389,757, srow:42411
25047 chr1 16482383 16482686 wgEncodeRegTfbsClusteredV3 FOXP2 score:186, expCount:1, expNums:251, expScores:186, srow:42412
25047 chr1 16482389 16482988 wgEncodeRegTfbsClusteredV3 CTBP2 score:155, expCount:1, expNums:348, expScores:155, srow:42413
25047 chr1 16482400 16482839 wgEncodeRegTfbsClusteredV3 TEAD4 score:740, expCount:2, expNums:160,201, expScores:740,361, srow:42414
25047 chr1 16482411 16482806 wgEncodeRegTfbsClusteredV3 MAX score:146, expCount:1, expNums:395, expScores:146, srow:42415
25047 chr1 16482441 16482830 wgEncodeRegTfbsClusteredV3 MAZ score:656, expCount:2, expNums:396,440, expScores:656,436, srow:42416
25047 chr1 16482444 16482723 wgEncodeRegTfbsClusteredV3 CREB1 score:551, expCount:1, expNums:47, expScores:551, srow:42417
25047 chr1 16482446 16482779 wgEncodeRegTfbsClusteredV3 JUND score:686, expCount:5, expNums:142,184,350,393,435, expScores:374,420,532,176,686, srow:42418
25047 chr1 16482447 16482722 wgEncodeRegTfbsClusteredV3 CEBPD score:106, expCount:1, expNums:173, expScores:106, srow:42419
25047 chr1 16482452 16482750 wgEncodeRegTfbsClusteredV3 JUN score:194, expCount:3, expNums:346,428,458, expScores:140,194,116, srow:42420
25047 chr1 16482455 16482794 wgEncodeRegTfbsClusteredV3 RFX5 score:250, expCount:2, expNums:406,449, expScores:175,250, srow:42421
25047 chr1 16482459 16482783 wgEncodeRegTfbsClusteredV3 EP300 score:208, expCount:2, expNums:145,190, expScores:193,208, srow:42422
  • Page 1 of 2
  • 25 of 39 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25047 cellmeth_recounts PrEC: 0, LNCaP: 15, DU145: 0
25047 cellmeth_diffreps_PrECvsLNCaP A=0, B=12, Length=280, Event=Up, log2FC=Inf, padj=0.00157949948552458
25047 cellmeth_diffreps_LNCaPvsDU145 A=12.83, B=0, Length=280, Event=Down, log2FC=-Inf, padj=0.00293113488474198
25047 cellexp id=ENSG00000227959, name=RP11-276H7.2, PrEC=46, str=37, LNCaP=5, str=3, DU145=34, str=44
25047 tcgameth site:cg09178261, B=0.27, L=0.51, H=0.44
25047 tcgameth site:cg15146752, B=0.36, L=0.67, H=0.62
25047 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25047 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305