DMR 25050 chr1:16534001-16534300 (300bp)
| DMR Stats | |
|---|---|
| Position | chr1:16534001-16534300 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | ARHGEF19 (0bp away) |
| ANODEV p-value | 8.37712369113e-05 |
| Frequencies | Benign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25050 | ARHGEF19 | 295 | uc001ayc.1 | chr1 | 16524599 | 16539104 | - | 300 | 100.0 | 0.87 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (9.67), E4 (34.33), I4 (25.67), E5 (25.67), I5 (5.33), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25050 | chr1 | 16533946 | 16534395 | wgEncodeRegDnaseClusteredV2 | 20 | score:607, srow:12744 |
| 25050 | chr1 | 16532769 | 16534421 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:62, expNums:32,61,62,78,104,105,130,131,146,147,163,168,191,192,206,207,228,229,249,256,259,283,306,326,328,330,332,334,336,338,340,362,366,402,403,445,446,461,465,520,521,522,523,525,526,563,564,577,583,585,596,599,602,610,613,616,619,622,632,633,634,637, expScores:315,925,855,278,448,1000,346,304,343,458,330,329,908,1000,249,496,350,800,307,475,779,148,631,642,398,159,630,290,212,347,585,155,313,949,766,359,451,130,367,697,570,906,1000,298,420,762,686,195,449,409,877,135,188,242,705,501,125,252,305,1000,459,264, srow:42864 |
| 25050 | chr1 | 16533151 | 16534024 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:1000, expCount:1, expNums:30, expScores:840, srow:42890 |
| 25050 | chr1 | 16533167 | 16534252 | wgEncodeRegTfbsClusteredV3 | KDM5B | score:503, expCount:1, expNums:31, expScores:310, srow:42892 |
| 25050 | chr1 | 16533183 | 16534071 | wgEncodeRegTfbsClusteredV3 | RBBP5 | score:255, expCount:1, expNums:8, expScores:211, srow:42895 |
| 25050 | chr1 | 16533371 | 16534030 | wgEncodeRegTfbsClusteredV3 | SMARCB1 | score:259, expCount:1, expNums:391, expScores:259, srow:42908 |
| 25050 | chr1 | 16533383 | 16534240 | wgEncodeRegTfbsClusteredV3 | SMARCC1 | score:229, expCount:1, expNums:371, expScores:223, srow:42909 |
| 25050 | chr1 | 16533661 | 16534036 | wgEncodeRegTfbsClusteredV3 | ZKSCAN1 | score:193, expCount:1, expNums:418, expScores:193, srow:42921 |
| 25050 | chr1 | 16533698 | 16534201 | wgEncodeRegTfbsClusteredV3 | CHD1 | score:316, expCount:1, expNums:23, expScores:316, srow:42922 |
| 25050 | chr1 | 16533800 | 16534075 | wgEncodeRegTfbsClusteredV3 | TAL1 | score:137, expCount:1, expNums:542, expScores:137, srow:42923 |
| 25050 | chr1 | 16533979 | 16534374 | wgEncodeRegTfbsClusteredV3 | MAX | score:134, expCount:1, expNums:395, expScores:134, srow:42924 |
| 25050 | chr1 | 16534112 | 16534381 | wgEncodeRegTfbsClusteredV3 | YY1 | score:167, expCount:1, expNums:164, expScores:167, srow:42925 |
| 25050 | chr1 | 16534210 | 16534725 | wgEncodeRegTfbsClusteredV3 | TFAP2C | score:400, expCount:1, expNums:370, expScores:400, srow:42926 |
| 25050 | chr1 | 16534262 | 16534791 | wgEncodeRegTfbsClusteredV3 | TFAP2A | score:175, expCount:1, expNums:369, expScores:175, srow:42927 |
| 25050 | chr1 | 16534016 | 16534023 | tfbsConsSites | V$NKX25_02 | score:927, zScore:2.01, srow:34168 |
| 25050 | chr1 | 16534190 | 16534190 | cosmic | COSM1183516 | srow:9733 |
| 25050 | chr1 | 16534208 | 16534208 | cosmic | COSM21844 | srow:9734 |
| 25050 | chr1 | 16534208 | 16534208 | cosmic | COSM127359 | srow:9735 |
| 25050 | chr1 | 16534232 | 16534232 | cosmic | COSM1185339 | srow:9736 |
| 25050 | chr1 | 16534014 | 16534032 | phastConsElements100way | lod=92 | score:441, srow:62743 |
| 25050 | chr1 | 16534034 | 16534047 | phastConsElements100way | lod=55 | score:390, srow:62744 |
| 25050 | chr1 | 16534068 | 16534070 | phastConsElements100way | lod=13 | score:247, srow:62745 |
| 25050 | chr1 | 16534076 | 16534080 | phastConsElements100way | lod=26 | score:316, srow:62746 |
| 25050 | chr1 | 16534093 | 16534095 | phastConsElements100way | lod=13 | score:247, srow:62747 |
| 25050 | chr1 | 16534167 | 16534173 | phastConsElements100way | lod=41 | score:361, srow:62748 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25050 | cellmeth_recounts | PrEC: 41, LNCaP: 23, DU145: 0 |  |
| 25050 | cellmeth_diffreps_PrECvsLNCaP | A=206, B=28, Length=980, Event=Down, log2FC=-2.88, padj=0 |  |
| 25050 | cellmeth_diffreps_PrECvsDU145 | A=206, B=7, Length=1080, Event=Down, log2FC=-4.88, padj=0 |  |
| 25050 | cellexp | id=ENSG00000142632, name=ARHGEF19, PrEC=1287, str=144, LNCaP=792, str=565, DU145=1264, str=936 |  |
| 25050 | tcgameth | site:cg20430773, B=0.53, L=0.74, H=0.7 |  |
| 25050 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25050 | tcgaexp | gene=ARHGEF19, entrez=128272, pos=chr1:16524599-16539104(-), B=1138, L=651, M=622, H=444 |  |
| 25050 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |