DMR 25053 chr1:16847051-16847450 (400bp)

DMR Stats
Positionchr1:16847051-16847450 (View on UCSC)
Width400bp
Genomic Contextpromoter
Nearest GenesTRNA_Asn (0bp away)
ANODEV p-value1.78947636528e-05
FrequenciesBenign: 1.0 (14.29%), Low: 4.0 (66.67%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25053 TRNA_Asn 302 uc021ogp.1 chr1 16847080 16847153 - 74 18.5 1.88 1 100.0 E1 (18.5) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25053 chr1 16846901 16847555 wgEncodeRegDnaseClusteredV2 37 score:661, srow:12999
25053 chr1 16846821 16847264 wgEncodeRegTfbsClusteredV3 GATA2 score:190, expCount:1, expNums:459, expScores:190, srow:43906
25053 chr1 16846943 16847356 wgEncodeRegTfbsClusteredV3 TBP score:1000, expCount:3, expNums:317,359,545, expScores:206,1000,203, srow:43907
25053 chr1 16846997 16847893 wgEncodeRegTfbsClusteredV3 RBBP5 score:326, expCount:1, expNums:8, expScores:169, srow:43908
25053 chr1 16847006 16847272 wgEncodeRegTfbsClusteredV3 CEBPB score:704, expCount:2, expNums:343,462, expScores:704,345, srow:43909
25053 chr1 16847023 16847272 wgEncodeRegTfbsClusteredV3 TEAD4 score:181, expCount:1, expNums:160, expScores:181, srow:43910
25053 chr1 16847026 16847315 wgEncodeRegTfbsClusteredV3 MAFK score:209, expCount:1, expNums:351, expScores:209, srow:43911
25053 chr1 16847064 16847313 wgEncodeRegTfbsClusteredV3 NRF1 score:129, expCount:1, expNums:354, expScores:129, srow:43912
25053 chr1 16847263 16847752 wgEncodeRegTfbsClusteredV3 TAF1 score:173, expCount:1, expNums:157, expScores:173, srow:43913
25053 chr1 16847415 16847840 wgEncodeRegTfbsClusteredV3 CTCF score:160, expCount:4, expNums:5,20,659,676, expScores:121,127,160,111, srow:43914
25053 chr1 16847080 16847154 phastConsElements100way lod=31 score:333, srow:64137
25053 chr1 16847281 16847892 cpgIsland CpG: 42 length:612, cpgNum:42, gcNum:384, perCpg:13.7, perGc:62.7, obsExp:0.7, srow:508
25053 chr1 16845281 16847280 cpgShore — values(x.gr)[overs$srow, ]:880
  • 13 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25053 cellmeth_recounts PrEC: 29, LNCaP: 3, DU145: 18
25053 cellmeth_diffreps_PrECvsLNCaP A=43, B=2, Length=460, Event=Down, log2FC=-4.43, padj=1.00986010883926e-09
25053 cellmeth_diffreps_PrECvsDU145 A=42, B=11, Length=320, Event=Down, log2FC=-1.93, padj=0.000523743958488681
25053 cellexp id=ENSG00000224174, name=RP4-798A10.4, PrEC=0, str=0, LNCaP=0, str=1, DU145=0, str=0
25053 tcgameth site:cg26613586, B=0.34, L=0.42, H=0.41
25053 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25053 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305