DMR 25054 chr1:16861501-16861750 (250bp)

DMR Stats
Positionchr1:16861501-16861750 (View on UCSC)
Width250bp
Genomic Contextpromoter
Nearest GenesBC036435 (0bp away)
ANODEV p-value0.00993848264997
FrequenciesBenign: 2.0 (28.57%), Low: 5.0 (83.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25054 BC036435 304 uc021ogr.1 chr1 16860350 16862144 - 250 100.0 1.88 1 42.4 E1 (100), I1 (0), E2 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25054 chr1 16860846 16862795 wgEncodeRegDnaseClusteredV2 118 score:1000, srow:13008
25054 chr1 16860570 16862508 wgEncodeRegTfbsClusteredV3 EZH2 score:406, expCount:4, expNums:15,36,38,43, expScores:267,256,267,310, srow:43937
25054 chr1 16861206 16861881 wgEncodeRegTfbsClusteredV3 KAP1 score:337, expCount:1, expNums:365, expScores:337, srow:43940
25054 chr1 16861249 16861911 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:298, expCount:2, expNums:63,151, expScores:298,144, srow:43941
25054 chr1 16861319 16861914 wgEncodeRegTfbsClusteredV3 ZNF263 score:274, expCount:1, expNums:368, expScores:274, srow:43942
25054 chr1 16861432 16861735 wgEncodeRegTfbsClusteredV3 FOXP2 score:152, expCount:1, expNums:251, expScores:152, srow:43943
25054 chr1 16861455 16861948 wgEncodeRegTfbsClusteredV3 ATF3 score:967, expCount:1, expNums:45, expScores:967, srow:43944
25054 chr1 16861478 16862017 wgEncodeRegTfbsClusteredV3 EP300 score:212, expCount:1, expNums:60, expScores:212, srow:43945
25054 chr1 16861487 16862102 wgEncodeRegTfbsClusteredV3 MYBL2 score:264, expCount:1, expNums:186, expScores:264, srow:43946
25054 chr1 16861490 16861873 wgEncodeRegTfbsClusteredV3 USF1 score:251, expCount:1, expNums:69, expScores:251, srow:43947
25054 chr1 16861506 16862081 wgEncodeRegTfbsClusteredV3 TCF12 score:242, expCount:1, expNums:66, expScores:242, srow:43948
25054 chr1 16861541 16862060 wgEncodeRegTfbsClusteredV3 ETS1 score:359, expCount:1, expNums:51, expScores:359, srow:43949
25054 chr1 16861549 16861958 wgEncodeRegTfbsClusteredV3 FOSL2 score:325, expCount:1, expNums:52, expScores:325, srow:43950
25054 chr1 16861583 16862327 wgEncodeRegTfbsClusteredV3 SIN3A score:255, expCount:1, expNums:357, expScores:190, srow:43951
25054 chr1 16861643 16861892 wgEncodeRegTfbsClusteredV3 TEAD4 score:445, expCount:1, expNums:160, expScores:445, srow:43952
25054 chr1 16861655 16862251 wgEncodeRegTfbsClusteredV3 TBP score:896, expCount:4, expNums:317,359,412,452, expScores:151,373,221,514, srow:43953
25054 chr1 16861667 16861966 wgEncodeRegTfbsClusteredV3 NR3C1 score:160, expCount:1, expNums:56, expScores:160, srow:43954
25054 chr1 16861699 16861988 wgEncodeRegTfbsClusteredV3 MAFK score:188, expCount:1, expNums:351, expScores:188, srow:43955
25054 chr1 16861705 16861984 wgEncodeRegTfbsClusteredV3 CREB1 score:133, expCount:1, expNums:47, expScores:133, srow:43956
25054 chr1 16861707 16861970 wgEncodeRegTfbsClusteredV3 CEBPB score:198, expCount:1, expNums:343, expScores:198, srow:43957
25054 chr1 16861707 16861933 wgEncodeRegTfbsClusteredV3 RPC155 score:563, expCount:1, expNums:407, expScores:563, srow:43958
25054 chr1 16861719 16861968 wgEncodeRegTfbsClusteredV3 NRF1 score:132, expCount:1, expNums:354, expScores:132, srow:43959
25054 chr1 16861734 16862719 wgEncodeRegTfbsClusteredV3 RBBP5 score:570, expCount:1, expNums:8, expScores:242, srow:43960
25054 chr1 16860874 16862296 cpgIsland CpG: 105 length:1423, cpgNum:105, gcNum:847, perCpg:14.8, perGc:59.5, obsExp:0.84, srow:509
  • 24 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25054 cellmeth_recounts PrEC: 4, LNCaP: 0, DU145: 4
25054 cellexp id=ENSG00000233421, name=U1, PrEC=0, str=0, LNCaP=1, str=1, DU145=18, str=10
25054 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25054 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305