DMR 25055 chr1:16973051-16973200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr1:16973051-16973200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | MST1P2 (0bp away) |
| ANODEV p-value | 0.0013393153739 |
| Frequencies | Benign: 1.0 (14.29%), Low: 5.0 (83.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25055 | MST1P2 | 311 | uc001azk.2 | chr1 | 16972864 | 16975287 | + | 150 | 100.0 | 3.14 | 1 | 100.0 | E1 (0), I1 (27.33), E2 (72.67), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
| 25055 | MST1P2 | 311 | uc009vow.2 | chr1 | 16972069 | 16974587 | + | 150 | 100.0 | 0.87 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (27.33), E3 (72.67), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 25055 | MST1P2 | 311 | uc010ocg.1 | chr1 | 16972069 | 16974587 | + | 150 | 100.0 | 1.88 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (27.33), E3 (72.67), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 25055 | MST1P2 | 311 | uc010och.2 | chr1 | 16972069 | 16976915 | + | 150 | 100.0 | 1.88 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (27.33), E3 (72.67), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 25055 | MST1P2 | 311 | uc010oci.1 | chr1 | 16972864 | 16974587 | + | 150 | 100.0 | 3.14 | 1 | 100.0 | E1 (0), I1 (27.33), E2 (72.67), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25055 | chr1 | 16973089 | 16973094 | phastConsElements100way | lod=35 | score:345, srow:64386 |
| 25055 | chr1 | 16973096 | 16973118 | phastConsElements100way | lod=42 | score:363, srow:64387 |
| 25055 | chr1 | 16973123 | 16973145 | phastConsElements100way | lod=87 | score:436, srow:64388 |
| 25055 | chr1 | 16973162 | 16973209 | phastConsElements100way | lod=149 | score:489, srow:64389 |
| 25055 | chr1 | 16971493 | 16973485 | cpgShore | — | values(x.gr)[overs$srow, ]:889 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25055 | cellmeth_recounts | PrEC: 15, LNCaP: 1, DU145: 3 |  |
| 25055 | cellmeth_diffreps_PrECvsLNCaP | A=62, B=6, Length=600, Event=Down, log2FC=-3.37, padj=2.31835690798951e-11 |  |
| 25055 | cellmeth_diffreps_PrECvsDU145 | A=62, B=5, Length=600, Event=Down, log2FC=-3.63, padj=5.34387576454339e-12 |  |
| 25055 | cellexp | id=ENSG00000186301, name=MST1P2, PrEC=104, str=142, LNCaP=168, str=49, DU145=140, str=139 |  |
| 25055 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25055 | tcgaexp | gene=MST1P2, entrez=11209, pos=chr1:16972069-16976915(+), B=115, L=85, M=87, H=114 |  |
| 25055 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |