DMR 25056 chr1:16973901-16975000 (1100bp)
| DMR Stats | |
|---|---|
| Position | chr1:16973901-16975000 (View on UCSC) |
| Width | 1100bp |
| Genomic Context | promoter |
| Nearest Genes | MST1P2 (0bp away) |
| ANODEV p-value | 1.73829764596e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25056 | MST1P2 | 311 | uc001azk.2 | chr1 | 16972864 | 16975287 | + | 1100 | 100.0 | 0.87 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (5.18), E5 (10.82), I5 (18.45), E6 (65.64), I6 (0), E7 (0) | 64.82 |
| 25056 | MST1P2 | 311 | uc001azm.4 | chr1 | 16973908 | 16976915 | + | 1093 | 99.36 | 1.88 | 1 | 46.09 | E1 (15.36), I1 (18.45), E2 (65.64), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
| 25056 | MST1P2 | 311 | uc009vow.2 | chr1 | 16972069 | 16974587 | + | 687 | 62.45 | 1.88 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (62.45) | 100.0 |
| 25056 | MST1P2 | 311 | uc009vox.3 | chr1 | 16973908 | 16976915 | + | 1093 | 99.36 | 3.14 | 1 | 46.09 | E1 (15.36), I1 (18.45), E2 (65.64), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 25056 | MST1P2 | 311 | uc010ocg.1 | chr1 | 16972069 | 16974587 | + | 687 | 62.45 | 34.48 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (62.45) | 100.0 |
| 25056 | MST1P2 | 311 | uc010och.2 | chr1 | 16972069 | 16976915 | + | 1100 | 100.0 | 100.0 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (5.18), E6 (10.82), I6 (18.45), E7 (65.64), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 25056 | MST1P2 | 311 | uc010oci.1 | chr1 | 16972864 | 16974587 | + | 687 | 62.45 | 11.56 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (62.45) | 100.0 |
- 7 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25056 | chr1 | 16973901 | 16974070 | wgEncodeRegDnaseClusteredV2 | 2 | score:903, srow:13091 |
| 25056 | chr1 | 16974226 | 16974655 | wgEncodeRegDnaseClusteredV2 | 11 | score:669, srow:13092 |
| 25056 | chr1 | 16973705 | 16974194 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:146, expCount:1, expNums:157, expScores:146, srow:44689 |
| 25056 | chr1 | 16973763 | 16975462 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:386, expCount:4, expNums:15,19,38,43, expScores:278,113,220,298, srow:44690 |
| 25056 | chr1 | 16973804 | 16974279 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:141, expCount:1, expNums:610, expScores:141, srow:44691 |
| 25056 | chr1 | 16974391 | 16974874 | wgEncodeRegTfbsClusteredV3 | SETDB1 | score:156, expCount:1, expNums:533, expScores:156, srow:44692 |
| 25056 | chr1 | 16974656 | 16975291 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:256, expCount:1, expNums:616, expScores:256, srow:44693 |
| 25056 | chr1 | 16973955 | 16973963 | phastConsElements100way | lod=59 | score:397, srow:64419 |
| 25056 | chr1 | 16973965 | 16973999 | phastConsElements100way | lod=214 | score:525, srow:64420 |
| 25056 | chr1 | 16974001 | 16974008 | phastConsElements100way | lod=44 | score:368, srow:64421 |
| 25056 | chr1 | 16974010 | 16974032 | phastConsElements100way | lod=143 | score:485, srow:64422 |
| 25056 | chr1 | 16974034 | 16974038 | phastConsElements100way | lod=33 | score:340, srow:64423 |
| 25056 | chr1 | 16974045 | 16974081 | phastConsElements100way | lod=163 | score:498, srow:64424 |
| 25056 | chr1 | 16974316 | 16974336 | phastConsElements100way | lod=78 | score:425, srow:64425 |
| 25056 | chr1 | 16974338 | 16974351 | phastConsElements100way | lod=80 | score:427, srow:64426 |
| 25056 | chr1 | 16974356 | 16974372 | phastConsElements100way | lod=44 | score:368, srow:64427 |
| 25056 | chr1 | 16974374 | 16974403 | phastConsElements100way | lod=205 | score:520, srow:64428 |
| 25056 | chr1 | 16974407 | 16974423 | phastConsElements100way | lod=56 | score:392, srow:64429 |
| 25056 | chr1 | 16974428 | 16974429 | phastConsElements100way | lod=16 | score:268, srow:64430 |
| 25056 | chr1 | 16974437 | 16974438 | phastConsElements100way | lod=23 | score:304, srow:64431 |
| 25056 | chr1 | 16974443 | 16974456 | phastConsElements100way | lod=109 | score:458, srow:64432 |
| 25056 | chr1 | 16974553 | 16974622 | phastConsElements100way | lod=467 | score:602, srow:64433 |
| 25056 | chr1 | 16974627 | 16974670 | phastConsElements100way | lod=256 | score:542, srow:64434 |
| 25056 | chr1 | 16974675 | 16974705 | phastConsElements100way | lod=124 | score:471, srow:64435 |
| 25056 | chr1 | 16974783 | 16974827 | phastConsElements100way | lod=129 | score:475, srow:64436 |
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- 25 of 28 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25056 | cellmeth_recounts | PrEC: 33, LNCaP: 30, DU145: 17 |  |
| 25056 | cellmeth_diffreps_PrECvsLNCaP | A=75, B=13, Length=460, Event=Down, log2FC=-2.53, padj=3.29301742921649e-10 |  |
| 25056 | cellmeth_diffreps_PrECvsDU145 | A=89, B=4, Length=880, Event=Down, log2FC=-4.48, padj=0 |  |
| 25056 | cellexp | id=ENSG00000186301, name=MST1P2, PrEC=104, str=142, LNCaP=168, str=49, DU145=140, str=139 |  |
| 25056 | tcgameth | site:cg06599927, B=0.3, L=0.42, H=0.42 |  |
| 25056 | tcgameth | site:cg14237550, B=0.32, L=0.48, H=0.47 |  |
| 25056 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25056 | tcgaexp | gene=MST1P2, entrez=11209, pos=chr1:16972069-16976915(+), B=115, L=85, M=87, H=114 |  |
| 25056 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |