DMR 25059 chr1:17199151-17199850 (700bp)

DMR Stats
Positionchr1:17199151-17199850 (View on UCSC)
Width700bp
Genomic Context3' end
Nearest GenesCROCC, AK125737 (0bp away)
ANODEV p-value1.87223150871e-08
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25059 CROCC 318 uc009voy.1 chr1 17066768 17267729 + 700 100.0 28.97 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
25059 AK125737 324 uc021ohf.2 chr1 17197440 17200574 + 700 100.0 75.76 1 0.0 E1 (64.57), I1 (35.57), E2 (0) 39.43
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25059 chr1 17198681 17199855 wgEncodeRegDnaseClusteredV2 114 score:1000, srow:13191
25059 chr1 17198475 17199627 wgEncodeRegTfbsClusteredV3 RBBP5 score:377, expCount:1, expNums:8, expScores:321, srow:45215
25059 chr1 17198874 17200289 wgEncodeRegTfbsClusteredV3 EZH2 score:573, expCount:5, expNums:15,17,36,38,43, expScores:362,199,376,188,573, srow:45216
25059 chr1 17198909 17199364 wgEncodeRegTfbsClusteredV3 RPC155 score:370, expCount:1, expNums:407, expScores:370, srow:45217
25059 chr1 17198953 17199242 wgEncodeRegTfbsClusteredV3 MAFK score:173, expCount:1, expNums:351, expScores:173, srow:45218
25059 chr1 17198972 17199444 wgEncodeRegTfbsClusteredV3 ATF3 score:1000, expCount:1, expNums:45, expScores:428, srow:45219
25059 chr1 17198984 17199176 wgEncodeRegTfbsClusteredV3 TBP score:923, expCount:1, expNums:359, expScores:923, srow:45220
25059 chr1 17198999 17199518 wgEncodeRegTfbsClusteredV3 SIN3A score:213, expCount:1, expNums:357, expScores:213, srow:45221
25059 chr1 17199012 17199627 wgEncodeRegTfbsClusteredV3 CHD1 score:245, expCount:1, expNums:4, expScores:245, srow:45222
25059 chr1 17199038 17199287 wgEncodeRegTfbsClusteredV3 TEAD4 score:214, expCount:1, expNums:160, expScores:214, srow:45223
25059 chr1 17199112 17199631 wgEncodeRegTfbsClusteredV3 ETS1 score:249, expCount:1, expNums:51, expScores:249, srow:45224
25059 chr1 17199163 17199472 wgEncodeRegTfbsClusteredV3 POLR2A score:193, expCount:1, expNums:596, expScores:193, srow:45225
25059 chr1 17199187 17199490 wgEncodeRegTfbsClusteredV3 FOXP2 score:133, expCount:1, expNums:251, expScores:133, srow:45226
25059 chr1 17199477 17199980 wgEncodeRegTfbsClusteredV3 REST score:277, expCount:1, expNums:59, expScores:277, srow:45227
25059 chr1 17199573 17199905 wgEncodeRegTfbsClusteredV3 CTCF score:329, expCount:12, expNums:5,137,595,598,609,628,629,631,635,658,662,676, expScores:226,164,329,172,184,175,214,199,199,98,174,152, srow:45228
25059 chr1 17199604 17199953 wgEncodeRegTfbsClusteredV3 MAX score:176, expCount:1, expNums:278, expScores:176, srow:45229
25059 chr1 17199715 17199964 wgEncodeRegTfbsClusteredV3 NRF1 score:109, expCount:1, expNums:354, expScores:109, srow:45230
25059 chr1 17199756 17200239 wgEncodeRegTfbsClusteredV3 SETDB1 score:136, expCount:1, expNums:533, expScores:136, srow:45231
25059 chr1 17199849 17200158 wgEncodeRegTfbsClusteredV3 POLR2A score:352, expCount:3, expNums:61,62,596, expScores:352,258,262, srow:45232
25059 chr1 17198627 17200049 cpgIsland CpG: 103 length:1423, cpgNum:103, gcNum:847, perCpg:14.5, perGc:59.5, obsExp:0.82, srow:527
  • 20 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25059 cellmeth_recounts PrEC: 2, LNCaP: 11, DU145: 22
25059 cellexp id=ENSG00000058453, name=CROCC, PrEC=2384, str=844, LNCaP=1171, str=349, DU145=500, str=268
25059 cellexp id=ENSG00000228549, name=U1, PrEC=4, str=0, LNCaP=28, str=16, DU145=111, str=41
25059 tcgameth site:cg11334694, B=0.24, L=0.32, H=0.34
25059 tcgameth site:cg21692666, B=0.26, L=0.59, H=0.56
25059 tcgaexp gene=CROCC, entrez=9696, pos=chr1:17066768-17299474(+), B=1096, L=1255, M=1227, H=1094
25059 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25059 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305