DMR 25079 chr1:18956801-18957000 (200bp)

DMR Stats
Positionchr1:18956801-18957000 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesPAX7 (499bp away)
ANODEV p-value0.00157397579372
FrequenciesBenign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25079 chr1 18956666 18957075 wgEncodeRegDnaseClusteredV2 9 score:290, srow:14848
25079 chr1 18956376 18961347 wgEncodeRegTfbsClusteredV3 EZH2 score:980, expCount:11, expNums:3,6,13,15,17,19,21,36,38,40,43, expScores:188,416,336,262,194,178,377,403,184,236,284, srow:48796
25079 chr1 18956400 18956999 wgEncodeRegTfbsClusteredV3 CTBP2 score:122, expCount:1, expNums:348, expScores:122, srow:48797
25079 chr1 18956896 18959829 cpgIsland CpG: 205 length:2934, cpgNum:205, gcNum:1669, perCpg:14, perGc:56.9, obsExp:0.86, srow:554
25079 chr1 18954896 18956895 cpgShore — values(x.gr)[overs$srow, ]:966
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25079 cellmeth_recounts PrEC: 8, LNCaP: 1, DU145: 3
25079 cellmeth_diffreps_PrECvsLNCaP A=11, B=0, Length=200, Event=Down, log2FC=-Inf, padj=0.00296620769710024
25079 tcgameth site:cg25020286, B=0.55, L=0.78, H=0.75
25079 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25079 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305