DMR 25080 chr1:18957951-18959700 (1750bp)

DMR Stats
Positionchr1:18957951-18959700 (View on UCSC)
Width1750bp
Genomic Contextpromoter
Nearest GenesPAX7 (0bp away)
ANODEV p-value9.07424296112e-07
FrequenciesBenign: 0.0 (0.0%), Low: 3.0 (50.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25080 PAX7 345 uc001bay.3 chr1 18957500 19062632 + 1750 100.0 0.63 0 2.8 E1 (13.26), I1 (86.8), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25080 PAX7 345 uc001baz.3 chr1 18957500 19062632 + 1750 100.0 0.63 0 2.8 E1 (13.26), I1 (86.8), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
25080 PAX7 345 uc010oct.2 chr1 18957500 19075360 + 1750 100.0 0.36 0 2.8 E1 (13.26), I1 (86.8), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25080 chr1 18957366 18959115 wgEncodeRegDnaseClusteredV2 43 score:1000, srow:14849
25080 chr1 18959146 18960055 wgEncodeRegDnaseClusteredV2 20 score:343, srow:14850
25080 chr1 18956376 18961347 wgEncodeRegTfbsClusteredV3 EZH2 score:980, expCount:11, expNums:3,6,13,15,17,19,21,36,38,40,43, expScores:188,416,336,262,194,178,377,403,184,236,284, srow:48796
25080 chr1 18957459 18958058 wgEncodeRegTfbsClusteredV3 CTBP2 score:256, expCount:1, expNums:348, expScores:256, srow:48800
25080 chr1 18957483 18958448 wgEncodeRegTfbsClusteredV3 CHD1 score:505, expCount:1, expNums:4, expScores:341, srow:48801
25080 chr1 18957517 18958006 wgEncodeRegTfbsClusteredV3 TAF1 score:165, expCount:1, expNums:157, expScores:165, srow:48802
25080 chr1 18957651 18957974 wgEncodeRegTfbsClusteredV3 SP1 score:149, expCount:1, expNums:153, expScores:149, srow:48803
25080 chr1 18957702 18957961 wgEncodeRegTfbsClusteredV3 TCF12 score:164, expCount:1, expNums:159, expScores:164, srow:48804
25080 chr1 18957746 18958415 wgEncodeRegTfbsClusteredV3 RBBP5 score:214, expCount:1, expNums:8, expScores:214, srow:48806
25080 chr1 18958047 18958182 wgEncodeRegTfbsClusteredV3 YY1 score:397, expCount:1, expNums:162, expScores:397, srow:48807
25080 chr1 18959221 18960486 wgEncodeRegTfbsClusteredV3 SUZ12 score:348, expCount:2, expNums:358,578, expScores:163,156, srow:48808
25080 chr1 18959578 18959987 wgEncodeRegTfbsClusteredV3 GATA2 score:411, expCount:1, expNums:586, expScores:411, srow:48809
25080 chr1 18957969 18957981 tfbsConsSites V$MZF1_02 score:895, zScore:2.36, srow:37950
25080 chr1 18958099 18958127 tfbsConsSites V$MYOGNF1_01 score:751, zScore:1.94, srow:37951
25080 chr1 18958103 18958122 tfbsConsSites V$P53_01 score:674, zScore:1.69, srow:37952
25080 chr1 18958167 18958174 tfbsConsSites V$STAT3_02 score:993, zScore:1.81, srow:37953
25080 chr1 18958477 18958491 tfbsConsSites V$TST1_01 score:837, zScore:1.76, srow:37954
25080 chr1 18958784 18958802 tfbsConsSites V$OCT1_01 score:792, zScore:1.83, srow:37955
25080 chr1 18959187 18959199 tfbsConsSites V$MZF1_02 score:857, zScore:1.71, srow:37956
25080 chr1 18959217 18959225 tfbsConsSites V$ZIC1_01 score:931, zScore:2, srow:37957
25080 chr1 18959217 18959225 tfbsConsSites V$ZIC2_01 score:918, zScore:2.22, srow:37958
25080 chr1 18959271 18959291 tfbsConsSites V$STAT1_01 score:769, zScore:1.89, srow:37959
25080 chr1 18959311 18959330 tfbsConsSites V$ARNT_02 score:802, zScore:2.13, srow:37960
25080 chr1 18959312 18959330 tfbsConsSites V$PAX2_01 score:776, zScore:1.83, srow:37961
25080 chr1 18959312 18959332 tfbsConsSites V$PAX4_01 score:819, zScore:2.04, srow:37962
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  • 25 of 95 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25080 cellmeth_recounts PrEC: 14, LNCaP: 52, DU145: 31
25080 cellmeth_diffreps_LNCaPvsDU145 A=17.1, B=0.94, Length=220, Event=Down, log2FC=-4.19, padj=0.00311648242974852
25080 cellexp id=ENSG00000009709, name=PAX7, PrEC=0, str=2, LNCaP=2, str=1, DU145=1, str=0
25080 tcgameth site:cg00065215, B=0.1, L=0.39, H=0.35
25080 tcgameth site:cg00855990, B=0.44, L=0.61, H=0.6
25080 tcgameth site:cg07398105, B=0.26, L=0.44, H=0.37
25080 tcgameth site:cg09670535, B=0.39, L=0.56, H=0.53
25080 tcgameth site:cg09975867, B=0.3, L=0.56, H=0.53
25080 tcgameth site:cg12601945, B=0.16, L=0.45, H=0.37
25080 tcgameth site:cg13969001, B=0.05, L=0.33, H=0.3
25080 tcgameth site:cg16405019, B=0.15, L=0.43, H=0.38
25080 tcgameth site:cg26433368, B=0.18, L=0.22, H=0.27
25080 tcgaexp gene=PAX7, entrez=5081, pos=chr1:18957500-19075360(+), B=10, L=2, M=3, H=5
25080 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25080 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305