DMR 25089 chr1:19206401-19206600 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:19206401-19206600 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | ALDH4A1 (0bp away) |
| ANODEV p-value | 2.99429713563e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 6.0 (100.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25089 | ALDH4A1 | 347 | uc001bbb.3 | chr1 | 19197924 | 19229293 | - | 200 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 25089 | ALDH4A1 | 347 | uc001bbc.3 | chr1 | 19197924 | 19229293 | - | 200 | 100.0 | 0.23 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 25089 | ALDH4A1 | 347 | uc010ocu.2 | chr1 | 19197924 | 19217385 | - | 200 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 25089 | ALDH4A1 | 347 | uc021ohl.1 | chr1 | 19197924 | 19229293 | - | 200 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25089 | chr1 | 19206286 | 19206775 | wgEncodeRegDnaseClusteredV2 | 18 | score:650, srow:15091 |
| 25089 | chr1 | 19206344 | 19206679 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:201, expCount:1, expNums:256, expScores:201, srow:49136 |
| 25089 | chr1 | 19206476 | 19206885 | wgEncodeRegTfbsClusteredV3 | GATA2 | score:200, expCount:1, expNums:586, expScores:200, srow:49137 |
| 25089 | chr1 | 19206411 | 19206423 | tfbsConsSites | V$PAX3_01 | score:814, zScore:2.03, srow:38745 |
| 25089 | chr1 | 19206423 | 19206436 | tfbsConsSites | V$MRF2_01 | score:860, zScore:2.38, srow:38746 |
| 25089 | chr1 | 19206431 | 19206444 | tfbsConsSites | V$FAC1_01 | score:849, zScore:1.97, srow:38747 |
| 25089 | chr1 | 19206432 | 19206437 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:38748 |
| 25089 | chr1 | 19206447 | 19206459 | tfbsConsSites | V$OCT_C | score:807, zScore:1.75, srow:38749 |
| 25089 | chr1 | 19206448 | 19206461 | tfbsConsSites | V$CHX10_01 | score:822, zScore:2.03, srow:38750 |
| 25089 | chr1 | 19206480 | 19206497 | tfbsConsSites | V$CART1_01 | score:839, zScore:2.74, srow:38751 |
| 25089 | chr1 | 19206407 | 19206410 | phastConsElements100way | lod=16 | score:268, srow:73026 |
| 25089 | chr1 | 19206414 | 19206457 | phastConsElements100way | lod=284 | score:553, srow:73027 |
| 25089 | chr1 | 19206463 | 19206467 | phastConsElements100way | lod=13 | score:247, srow:73028 |
| 25089 | chr1 | 19206472 | 19206509 | phastConsElements100way | lod=170 | score:502, srow:73029 |
| 25089 | chr1 | 19206513 | 19206515 | phastConsElements100way | lod=12 | score:240, srow:73030 |
| 25089 | chr1 | 19206521 | 19206552 | phastConsElements100way | lod=108 | score:457, srow:73031 |
| 25089 | chr1 | 19206564 | 19206568 | phastConsElements100way | lod=13 | score:247, srow:73032 |
| 25089 | chr1 | 19206571 | 19206573 | phastConsElements100way | lod=18 | score:280, srow:73033 |
| 25089 | chr1 | 19206584 | 19206587 | phastConsElements100way | lod=19 | score:285, srow:73034 |
| 25089 | chr1 | 19206235 | 19207626 | cpgShelf | — | values(x.gr)[overs$srow, ]:738 |
- 20 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25089 | cellmeth_recounts | PrEC: 3, LNCaP: 1, DU145: 5 |  |
| 25089 | cellexp | id=ENSG00000159423, name=ALDH4A1, PrEC=2670, str=1791, LNCaP=1392, str=2034, DU145=1194, str=763 |  |
| 25089 | cellexp | id=ENSG00000255275, name=RP13-279N23.2, PrEC=1, str=0, LNCaP=0, str=0, DU145=0, str=1 |  |
| 25089 | tcgaexp | gene=ALDH4A1, entrez=8659, pos=chr1:19197924-19229293(-), B=8258, L=5474, M=6172, H=4691 |  |
| 25089 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25089 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |