DMR 25101 chr1:19746101-19746300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr1:19746101-19746300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | CAPZB (0bp away) |
| ANODEV p-value | 0.0017916780683 |
| Frequencies | Benign: 0.0 (0.0%), Low: 4.0 (66.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25101 | CAPZB | 358 | uc001bce.3 | chr1 | 19665267 | 19812066 | - | 200 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (28.5), E2 (45), I2 (27), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 25101 | CAPZB | 358 | uc009vpk.3 | chr1 | 19665267 | 19812066 | - | 200 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (28.5), E3 (45), I3 (27), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 25101 | CAPZB | 358 | uc010ocz.2 | chr1 | 19665267 | 19811201 | - | 200 | 100.0 | 0.21 | 0 | 0.0 | E1 (0), I1 (28.5), E2 (45), I2 (27), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0) | 0.0 |
| 25101 | CAPZB | 358 | uc021ohr.1 | chr1 | 19665267 | 19812066 | - | 200 | 100.0 | 0.29 | 0 | 0.0 | E1 (0), I1 (28.5), E2 (45), I2 (27), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 25101 | chr1 | 19746041 | 19746415 | wgEncodeRegDnaseClusteredV2 | 5 | score:185, srow:15609 |
| 25101 | chr1 | 19746227 | 19746238 | tfbsConsSites | V$LMO2COM_01 | score:921, zScore:1.73, srow:40492 |
| 25101 | chr1 | 19746161 | 19746161 | cosmic | COSM1337634 | srow:11975 |
| 25101 | chr1 | 19746200 | 19746200 | cosmic | COSM1337635 | srow:11976 |
| 25101 | chr1 | 19746216 | 19746216 | cosmic | COSM115736 | srow:11977 |
| 25101 | chr1 | 19746230 | 19746230 | cosmic | COSM366773 | srow:11978 |
| 25101 | chr1 | 19746146 | 19746150 | phastConsElements100way | lod=26 | score:316, srow:76218 |
| 25101 | chr1 | 19746153 | 19746169 | phastConsElements100way | lod=221 | score:528, srow:76219 |
| 25101 | chr1 | 19746171 | 19746247 | phastConsElements100way | lod=1003 | score:678, srow:76220 |
| 25101 | chr1 | 19746255 | 19746259 | phastConsElements100way | lod=18 | score:280, srow:76221 |
- 10 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 25101 | cellmeth_recounts | PrEC: 1, LNCaP: 6, DU145: 3 |  |
| 25101 | cellexp | id=ENSG00000077549, name=CAPZB, PrEC=16031, str=12144, LNCaP=7255, str=7933, DU145=9669, str=10273 |  |
| 25101 | tcgameth | site:cg23519022, B=0.88, L=0.91, H=0.89 |  |
| 25101 | tcgaexp | gene=CAPZB, entrez=832, pos=chr1:19665267-19812066(-), B=16574, L=14677, M=13959, H=12545 |  |
| 25101 | tcgaexp | gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019 |  |
| 25101 | tcgaexp | gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305 |  |