DMR 25104 chr1:19992101-19992800 (700bp)

DMR Stats
Positionchr1:19992101-19992800 (View on UCSC)
Width700bp
Genomic Contextpromoter
Nearest GenesHTR6 (0bp away)
ANODEV p-value0.00054187708649
FrequenciesBenign: 2.0 (28.57%), Low: 6.0 (100.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
25104 HTR6 364 uc001bcl.3 chr1 19991780 20006055 + 700 100.0 1.47 0 25.57 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
25104 chr1 19991866 19992715 wgEncodeRegDnaseClusteredV2 29 score:1000, srow:15805
25104 chr1 19992766 19993075 wgEncodeRegDnaseClusteredV2 5 score:256, srow:15806
25104 chr1 19990498 19992972 wgEncodeRegTfbsClusteredV3 EZH2 score:797, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:381,232,256,135,348,243,256,224,329, srow:51724
25104 chr1 19992330 19992936 wgEncodeRegTfbsClusteredV3 CTCF score:307, expCount:6, expNums:595,597,598,603,609,669, expScores:307,264,160,137,101,129, srow:51732
25104 chr1 19992346 19992681 wgEncodeRegTfbsClusteredV3 YY1 score:191, expCount:1, expNums:162, expScores:191, srow:51733
25104 chr1 19992249 19992261 tfbsConsSites V$ZID_01 score:848, zScore:1.7, srow:40991
25104 chr1 19992276 19992293 tfbsConsSites V$AHR_01 score:806, zScore:2.39, srow:40992
25104 chr1 19992277 19992295 tfbsConsSites V$SEF1_C score:745, zScore:2.16, srow:40993
25104 chr1 19992336 19992354 tfbsConsSites V$SEF1_C score:724, zScore:1.75, srow:40994
25104 chr1 19992339 19992359 tfbsConsSites V$NRSF_01 score:709, zScore:1.7, srow:40995
25104 chr1 19992394 19992406 tfbsConsSites V$OCT_C score:841, zScore:2.33, srow:40996
25104 chr1 19992446 19992465 tfbsConsSites V$MYCMAX_03 score:776, zScore:1.64, srow:40997
25104 chr1 19992447 19992467 tfbsConsSites V$PAX6_01 score:778, zScore:2.15, srow:40998
25104 chr1 19992488 19992507 tfbsConsSites V$YY1_02 score:786, zScore:2.06, srow:40999
25104 chr1 19992493 19992508 tfbsConsSites V$BRN2_01 score:827, zScore:2.22, srow:41000
25104 chr1 19992514 19992532 tfbsConsSites V$AHRARNT_02 score:773, zScore:1.72, srow:41001
25104 chr1 19992598 19992626 tfbsConsSites V$MYOGNF1_01 score:741, zScore:1.78, srow:41002
25104 chr1 19992613 19992636 tfbsConsSites V$COMP1_01 score:798, zScore:1.96, srow:41003
25104 chr1 19992649 19992667 tfbsConsSites V$AHRARNT_02 score:803, zScore:2.27, srow:41004
25104 chr1 19992681 19992699 tfbsConsSites V$PAX2_01 score:795, zScore:2.24, srow:41005
25104 chr1 19992738 19992756 tfbsConsSites V$AHRARNT_02 score:831, zScore:2.79, srow:41006
25104 chr1 19992762 19992776 tfbsConsSites V$E47_01 score:881, zScore:2.05, srow:41007
25104 chr1 19992263 19992264 cosmic COSM1722060 srow:12005
25104 chr1 19992290 19992290 cosmic COSM1337684 srow:12006
25104 chr1 19992308 19992308 cosmic COSM678268 srow:12007
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  • 25 of 67 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
25104 cellmeth_recounts PrEC: 252, LNCaP: 895, DU145: 29
25104 cellmeth_diffreps_PrECvsLNCaP A=375, B=710, Length=840, Event=Up, log2FC=0.92, padj=0
25104 cellmeth_diffreps_PrECvsDU145 A=411, B=20, Length=980, Event=Down, log2FC=-4.36, padj=0
25104 cellmeth_diffreps_LNCaPvsDU145 A=835.99, B=22.45, Length=1180, Event=Down, log2FC=-5.22, padj=0
25104 cellexp id=ENSG00000158748, name=HTR6, PrEC=0, str=0, LNCaP=41, str=5, DU145=3, str=2
25104 tcgameth site:cg00365524, B=0.53, L=0.63, H=0.59
25104 tcgameth site:cg18023598, B=0.37, L=0.51, H=0.53
25104 tcgameth site:cg22059812, B=0.39, L=0.57, H=0.56
25104 tcgameth site:cg27549720, B=0.45, L=0.8, H=0.76
25104 tcgaexp gene=HTR6, entrez=3362, pos=chr1:19991780-20006055(+), B=2, L=3, M=3, H=4
25104 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
25104 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305